View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11151_high_2 (Length: 662)
Name: NF11151_high_2
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 42939082 - 42938691
Alignment:
| Q |
18 |
aaagggtggccagaccttgagagagaaagtatgattgcaaaagtaaga---------gtaaattgatgggattatctatatctaagtgagtcaagaattg |
108 |
Q |
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| T |
42939082 |
aaagggtggccaggccttgagagagaaagtatgattgcaaaagtaagcagaaacatggtaaattgatgggattat----agctaagtgagtcaagaattg |
42938987 |
T |
|
| Q |
109 |
atttttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaattggtgaaataccaacaataacagagaagtaatgaattttgag |
208 |
Q |
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| T |
42938986 |
atttttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaa--ggtgaaataccaacaataacagagaagtaatgaattttgag |
42938889 |
T |
|
| Q |
209 |
taaatgatattttaatttgtaacagctagctatattatattataactcaaatga--cacatgaatagtagtgaataatattgaatgcaagaaaaatgtgt |
306 |
Q |
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| T |
42938888 |
taaatgatattttaatttgtatcagcta----tattatattataactcaaatgagacacatgaatagtagtgaataatattgaatgcaa---aaatgtgt |
42938796 |
T |
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| Q |
307 |
tcacttaagagtatgggagagtcctcttaaaggtgtcacattagaatatttatgacctggttcaccgacaattcttttttaagctcataataatgaatta |
406 |
Q |
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| T |
42938795 |
tcacataagagaatgggagagtcctcttaaaggtgtcacattagaatatttatgacctggttcaccgacaattcttttttaagctcataataatgaatta |
42938696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 410 - 646
Target Start/End: Complemental strand, 42937715 - 42937489
Alignment:
| Q |
410 |
tagatgctactatttgtctgcaaataaccatctttgaaggaaaaaattgagagtttgtgaatgcctccaaagtctccaactaaaataaataaataaatca |
509 |
Q |
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| T |
42937715 |
tagatgctactatttgtctgcaa-taaccatctttgaaggaaaaaattgag--tttgtgaatgcctccaaagtctacaactaaaataaataaataaatca |
42937619 |
T |
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| Q |
510 |
aactagaccaaacaagaattttactatgcaaacatgtacaattattataggagattaggatttgctgcattaagcaaatccacattcacacagaaatgtc |
609 |
Q |
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| T |
42937618 |
aactagaccatacaagaattttactatgcaaacatgtacaattattataggagattaggatttgct-------gcaaatccacattcacacagaaatgtc |
42937526 |
T |
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| Q |
610 |
aaacttaaaactaggtccgttcgatttcgatctgatg |
646 |
Q |
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| T |
42937525 |
aaacttaaaactaggtccgttcgatttcgatctgatg |
42937489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 85 - 294
Target Start/End: Complemental strand, 27464182 - 27463974
Alignment:
| Q |
85 |
tatatctaagtgagtcaagaattgatttttataagatgcatcaaattatgttaatgtgttttgcattgctaaagaaatgaattggtgaaataccaacaat |
184 |
Q |
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| T |
27464182 |
tatatctaagtgagccaagaatgaatttctataagatgcatcaaattaaattaatgtgttttgcattgctaaagaaataaa--ggtgaaataccaataat |
27464085 |
T |
|
| Q |
185 |
aaca-----gagaagtaatgaattttgagtaaatgatattttaatttgtaacagctagctatattatattataactcaaatgacacatgaatagtagtga |
279 |
Q |
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||| |||||| |||||||||||||||||| ||| ||||||||| ||| ||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
27464084 |
gacattgacgagaagcaatgaattttgagtaaataatactttaatttgcaac----ggctatattatattgtaactcaaatgacaaatgactagtagtga |
27463989 |
T |
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| Q |
280 |
ataatattgaatgca |
294 |
Q |
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| T |
27463988 |
atactattggatgca |
27463974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 27484336 - 27484267
Alignment:
| Q |
238 |
ctatattatattataactcaaatgacacatgaatagtagtgaataatattgaatgcaagaaaaatgtgttcac |
310 |
Q |
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| T |
27484336 |
ctatattatatcgtaactcaaatgacacatgaatattagtgaatactattggatgc---aaaaatgtgttcac |
27484267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 9350302 - 9350232
Alignment:
| Q |
85 |
tatatctaagtgagtcaagaattgatttttataagatgcatcaaattatgttaatgtgttttgcattgcta |
155 |
Q |
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|||||||||||||| ||| || | || |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
9350302 |
tatatctaagtgagctaaggatgaaattctatacgatgcatcaaattatgttaacgtgttttgcattgcta |
9350232 |
T |
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