View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11151_high_8 (Length: 252)
Name: NF11151_high_8
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_high_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 4164645 - 4164402
Alignment:
| Q |
9 |
agcagagatgtaaagttatccccaacagaaaattttagaattagctaatcatgatccactaacacaaacagatatggtgtcaaaaatacaatctattaac |
108 |
Q |
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| T |
4164645 |
agcagagatgtaaagttatccccaacagaaaattttagaattagctaatcatgatccactgacacaaacagatatggtgtcaaaaatacaatctattaac |
4164546 |
T |
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| Q |
109 |
ttagcaatctgcatgtttaccctatctagcagtaattttaacttctccattttggttgtaacagataaaacagaacatcagaaccttgttaaagtataat |
208 |
Q |
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| T |
4164545 |
ttagcaatctgcatgtttaccctatctagcagtaattttaacttctccattttggttgtaacagataaaacagaacatcagaaccttgttaaagtatagt |
4164446 |
T |
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| Q |
209 |
gcgaattcaccattaaacaaaacagtaatagagaaaatatgagt |
252 |
Q |
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| T |
4164445 |
gcgaattcaccattaaacaaaacagtaatagagaaaatatgagt |
4164402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 4177883 - 4177649
Alignment:
| Q |
9 |
agcagagatgtaaagttatccccaacagaaaattttagaattagctaatcatgatccactaacacaaacagatatggtgt--caaaaatacaatctatta |
106 |
Q |
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| T |
4177883 |
agcagagatgtaaagttatccccaacagaaaatttcagcattagctgatcatgatccacaaacacaaaaagacatggtgtgtcaaaaatacaatctattt |
4177784 |
T |
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| Q |
107 |
acttagcaatctgcatgtttaccctatctagcagtaatttt-aacttctccattttggttgtaacagataaaacagaacatcagaaccttgttaaagtat |
205 |
Q |
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| T |
4177783 |
acttagcaatctacatatttaccctatctagcaggaattttgaacttctccaattttgttgtaacagataaaacagaacatcagaaccttgttaaagtat |
4177684 |
T |
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| Q |
206 |
aatgcgaattcaccattaaacaaaacagtaataga |
240 |
Q |
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| T |
4177683 |
agtgagaattcaccgttaaacaacacaataataga |
4177649 |
T |
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