View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11151_high_9 (Length: 230)

Name: NF11151_high_9
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11151_high_9
NF11151_high_9
[»] chr6 (17 HSPs)
chr6 (5-215)||(33286535-33286745)
chr6 (5-189)||(33058585-33058766)
chr6 (123-197)||(33389052-33389126)
chr6 (126-203)||(33263633-33263710)
chr6 (123-199)||(9167781-9167857)
chr6 (123-189)||(33643607-33643673)
chr6 (123-174)||(31561802-31561853)
chr6 (123-180)||(33272821-33272878)
chr6 (123-191)||(33401631-33401699)
chr6 (5-73)||(9167906-9167974)
chr6 (5-61)||(33401761-33401817)
chr6 (5-74)||(31561686-31561755)
chr6 (5-64)||(33263793-33263852)
chr6 (5-64)||(33305630-33305689)
chr6 (5-64)||(33411096-33411155)
chr6 (5-62)||(33643482-33643539)
chr6 (141-197)||(33410977-33411033)
[»] chr2 (2 HSPs)
chr2 (123-191)||(17439828-17439896)
chr2 (5-74)||(17439705-17439774)
[»] chr4 (5 HSPs)
chr4 (5-69)||(31497797-31497861)
chr4 (150-198)||(31477987-31478035)
chr4 (5-71)||(31018931-31018997)
chr4 (5-71)||(31028809-31028875)
chr4 (152-193)||(31483839-31483880)
[»] scaffold0428 (1 HSPs)
scaffold0428 (5-61)||(7907-7963)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 33286745 - 33286535
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttagtaatnnnnnnncatatttccagttttataa 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  33286745 ggagcaggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaagttgttgtttagtaataaaaaaacatatttccagttttataa 33286646  T
Q  105 acagcatgctttaggaacaagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaagaggtt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33286645 acagcatgctttaggaacaagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaagaggtt 33286546  T
Q  205 ggattgaatgt 215  Q
    |||||||||||    
T  33286545 ggattgaatgt 33286535  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 33058766 - 33058585
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttagtaatnnnnnnncatatttccagttttataa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| | |||       |||||||||| ||||||||    
T  33058766 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttaatgttttgaaataaaaatacatatttccatttttataa 33058667  T
Q  105 acagcatgctttaggaacaagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttg 189  Q
    |    |   | |    | |||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||| ||||||||    
T  33058666 aactaaaaatat---taaaagtaatttattttttattttatttattgcaatgctttaggaaaagcatgttgaagccatagttttg 33058585  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 33389126 - 33389052
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatga 197  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  33389126 aagtaatttatttttacttttattttttgcaatgctttaggaaaggcatgttgaagccatagttttgaatgatga 33389052  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 33263710 - 33263633
Alignment:
Q  126 taatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaagaggt 203  Q
    ||||||||||||||||||||| |||||  |||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  33263710 taatttattttttcttttattttttgctttgctttaggaaaagcaagttaaagccatagttttggatgatgaagaggt 33263633  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 9167857 - 9167781
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaag 199  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||  ||||||||||||||||||    
T  9167857 aagtaatttactttttcttttattttttgcaattctttaggaaaagcatgttgaagcaatagttttgaatgatgaag 9167781  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 33643607 - 33643673
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttg 189  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||    
T  33643607 aagtaattaattttttcttttatttttttcaatgctttaggaaaagcatgttgaagccatagttttg 33643673  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 31561802 - 31561853
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgtt 174  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31561802 aagtaatttattttttcttttatgttttgcaatgctttaggaaaagcatgtt 31561853  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 33272878 - 33272821
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagcc 180  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||    
T  33272878 aagtaatttattttttcttttatttgttgcaatgctataggaaaagcatgttgaagcc 33272821  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 33401699 - 33401631
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaa 191  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||| ||||| ||||| || |||||||    
T  33401699 aagtaatttattttttcttatatgttttgcaatgctttaggaaaagaatgttgaagccatacttttgaa 33401631  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 9167974 - 9167906
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgttta 73  Q
    |||||||||||||||||| | ||||||||||| |||||  | |||||| ||||||||||| ||||||||    
T  9167974 ggagcaggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaagtagttgttta 9167906  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 33401817 - 33401761
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaa 61  Q
    ||||||||||||||||  || |||||||||||||||||| | |||||||||||||||    
T  33401817 ggagcaggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 31561686 - 31561755
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttag 74  Q
    |||||||||||||||||   |||||| ||||| |||||||| ||||||| |||||||||||  |||||||    
T  31561686 ggagcaggttgtggtcccatgaacaaatctacaatgttatgatggagaaaatggtaaagtttctgtttag 31561755  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33263852 - 33263793
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 64  Q
    |||| |||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||    
T  33263852 ggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 33263793  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33305689 - 33305630
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 64  Q
    |||||||| | ||||||| | | ||||||||| |||||||| ||||||||||||||||||    
T  33305689 ggagcagggtctggtccaaaaagcaactctacaatgttatggtggagaatatggtaaagt 33305630  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33411155 - 33411096
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 64  Q
    |||||||| | ||||||| | ||||||||||| | |||||| ||||||||||||||||||    
T  33411155 ggagcaggatctggtccaaaaaacaactctacaacgttatgatggagaatatggtaaagt 33411096  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 33643482 - 33643539
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaa 62  Q
    |||||||| ||||||||| | ||||| ||||| ||||| || ||||||||||||||||    
T  33643482 ggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 33643539  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 33411033 - 33410977
Alignment:
Q  141 tttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatga 197  Q
    |||||| |||| ||||| ||||||| |||||||| ||||| || |||||||||||||    
T  33411033 tttattttttgtaatgcattaggaagagcatgttgaagccatatttttgaatgatga 33410977  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 17439828 - 17439896
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaa 191  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||| ||||| ||||||||||    
T  17439828 aagtaatttatgttttcttttatttttcgcaatgctttaggaaaagcatgttgaagccatagttttgaa 17439896  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 17439705 - 17439774
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttag 74  Q
    |||||||||||||||| |||||||||||||| ||||||||  ||| ||| ||||||||||||||||||||    
T  17439705 ggagcaggttgtggtctacagaacaactctatgatgttattatggcgaaaatggtaaagttgttgtttag 17439774  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 31497797 - 31497861
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttg 69  Q
    |||||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  31497797 ggagcaggttgtggttgaaagaacaattctacgatgttatgttggagaatatggtaaagtagttg 31497861  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 31477987 - 31478035
Alignment:
Q  150 tgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaa 198  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  31477987 tgcaatgctttaggaaaagaatgttgaagccatagttttgaatcatgaa 31478035  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 31018997 - 31018931
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtt 71  Q
    ||||||||||||||| | | |||||  || || |||| |||||||||||||||||||||| ||||||    
T  31018997 ggagcaggttgtggttccccgaacatttcgacaatgtaatgttggagaatatggtaaagtagttgtt 31018931  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 31028875 - 31028809
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtt 71  Q
    |||||||||||||||||   |||||  || || |||| |||||||||||||||||||||| ||||||    
T  31028875 ggagcaggttgtggtccctcgaacatttcaacaatgtaatgttggagaatatggtaaagtagttgtt 31028809  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 31483839 - 31483880
Alignment:
Q  152 caatgctttaggaaaagcatgttaaagccttagttttgaatg 193  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  31483839 caatgctttaggaaaagaatgttgaagccatagttttgaatg 31483880  T

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Target: scaffold0428 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 7963 - 7907
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaa 61  Q
    |||||||| ||||||||| | ||||||||||| |||||| | |||||||||||||||    
T  7963 ggagcaggatgtggtccaaacaacaactctacaatgttacgatggagaatatggtaa 7907  T

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