View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11151_low_10 (Length: 262)
Name: NF11151_low_10
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4164407 - 4164161
Alignment:
| Q |
1 |
atgagtcaggccatataaatagcaatcagaaaattaagaatcccaactaaaatgttaattttgcactatgaaaagaaggtgg-tatactt---atttggc |
96 |
Q |
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| T |
4164407 |
atgagtcaggccatataaatagcaatcagaaaattaagaatcccaactaaaatggtaattttgcactatgaaaagaaggtgggtatacttgagatttggc |
4164308 |
T |
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| Q |
97 |
caaattactgaaactgacggagcagcaaagtttatagaaaataaaaataaccatcacgtaaatggatttgatcaaaacagaggatttttaattacctgtg |
196 |
Q |
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| T |
4164307 |
caaattactgaaactgacggagcagcaaagtttatagaaaataaaaataaccatcacgtaaatggatttgatcaaaacagaggatttttaattacctgtg |
4164208 |
T |
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| Q |
197 |
tttgcctttacccatcaggtctgaaccaagaagatccaaacaaatat |
243 |
Q |
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| T |
4164207 |
tttgcctttacccatcaggtatgaaccaagaagatccaaacaaatat |
4164161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 4177621 - 4177452
Alignment:
| Q |
29 |
gaaaattaagaatcccaactaaaatgttaattttgcactatgaaaagaaggtggtatactt---atttggccaaattactgaaactgacggagcagcaaa |
125 |
Q |
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| T |
4177621 |
gaaaaataagaatgccaacttaaatgttaattttgcgctatgaaaagaatgtggtatacttaaaatttggccaaaatactggaactgac-aaggtttcta |
4177523 |
T |
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| Q |
126 |
gtttatagaaaataaaaataaccatcacgtaaatggatttgatcaaaacagaggatttttaattacctgtgt |
197 |
Q |
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| T |
4177522 |
gaaaatgaaaaattaaaataaccatca-tttaatgggtttgatcaaaacagaggatttttaattacctgtgt |
4177452 |
T |
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