View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11151_low_11 (Length: 255)
Name: NF11151_low_11
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 40668028 - 40668270
Alignment:
| Q |
6 |
agatggacatcaaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacac |
105 |
Q |
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| T |
40668028 |
agatggacaacaaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacac |
40668127 |
T |
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| Q |
106 |
aagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttg |
205 |
Q |
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| T |
40668128 |
aagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttg |
40668227 |
T |
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| Q |
206 |
gtaagtgccttatgttgttttatcttatcttcaagtctaacaa |
248 |
Q |
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| T |
40668228 |
gtaagtgccttatgttgttttatcttatcttcaagtctaacaa |
40668270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 4301683 - 4301817
Alignment:
| Q |
71 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
170 |
Q |
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| T |
4301683 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
4301782 |
T |
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| Q |
171 |
tatttgcaataagtctcttcattggcatttatttg |
205 |
Q |
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| T |
4301783 |
tatttgcgataagtctcttcattggtatttatttg |
4301817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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