View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11151_low_13 (Length: 230)

Name: NF11151_low_13
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11151_low_13
NF11151_low_13
[»] chr6 (17 HSPs)
chr6 (5-215)||(33286535-33286745)
chr6 (5-189)||(33058585-33058766)
chr6 (123-197)||(33389052-33389126)
chr6 (126-203)||(33263633-33263710)
chr6 (123-199)||(9167781-9167857)
chr6 (123-189)||(33643607-33643673)
chr6 (123-174)||(31561802-31561853)
chr6 (123-180)||(33272821-33272878)
chr6 (123-191)||(33401631-33401699)
chr6 (5-73)||(9167906-9167974)
chr6 (5-61)||(33401761-33401817)
chr6 (5-74)||(31561686-31561755)
chr6 (5-64)||(33263793-33263852)
chr6 (5-64)||(33305630-33305689)
chr6 (5-64)||(33411096-33411155)
chr6 (5-62)||(33643482-33643539)
chr6 (141-197)||(33410977-33411033)
[»] chr2 (2 HSPs)
chr2 (123-191)||(17439828-17439896)
chr2 (5-74)||(17439705-17439774)
[»] chr4 (5 HSPs)
chr4 (5-69)||(31497797-31497861)
chr4 (150-198)||(31477987-31478035)
chr4 (5-71)||(31018931-31018997)
chr4 (5-71)||(31028809-31028875)
chr4 (152-193)||(31483839-31483880)
[»] scaffold0428 (1 HSPs)
scaffold0428 (5-61)||(7907-7963)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 33286745 - 33286535
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttagtaatnnnnnnncatatttccagttttataa 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  33286745 ggagcaggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaagttgttgtttagtaataaaaaaacatatttccagttttataa 33286646  T
Q  105 acagcatgctttaggaacaagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaagaggtt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33286645 acagcatgctttaggaacaagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaagaggtt 33286546  T
Q  205 ggattgaatgt 215  Q
    |||||||||||    
T  33286545 ggattgaatgt 33286535  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 33058766 - 33058585
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttagtaatnnnnnnncatatttccagttttataa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| | |||       |||||||||| ||||||||    
T  33058766 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttaatgttttgaaataaaaatacatatttccatttttataa 33058667  T
Q  105 acagcatgctttaggaacaagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttg 189  Q
    |    |   | |    | |||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||| ||||||||    
T  33058666 aactaaaaatat---taaaagtaatttattttttattttatttattgcaatgctttaggaaaagcatgttgaagccatagttttg 33058585  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 33389126 - 33389052
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatga 197  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  33389126 aagtaatttatttttacttttattttttgcaatgctttaggaaaggcatgttgaagccatagttttgaatgatga 33389052  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 33263710 - 33263633
Alignment:
Q  126 taatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaagaggt 203  Q
    ||||||||||||||||||||| |||||  |||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  33263710 taatttattttttcttttattttttgctttgctttaggaaaagcaagttaaagccatagttttggatgatgaagaggt 33263633  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 9167857 - 9167781
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaag 199  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||  ||||||||||||||||||    
T  9167857 aagtaatttactttttcttttattttttgcaattctttaggaaaagcatgttgaagcaatagttttgaatgatgaag 9167781  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 33643607 - 33643673
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttg 189  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||    
T  33643607 aagtaattaattttttcttttatttttttcaatgctttaggaaaagcatgttgaagccatagttttg 33643673  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 31561802 - 31561853
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgtt 174  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31561802 aagtaatttattttttcttttatgttttgcaatgctttaggaaaagcatgtt 31561853  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 33272878 - 33272821
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagcc 180  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||    
T  33272878 aagtaatttattttttcttttatttgttgcaatgctataggaaaagcatgttgaagcc 33272821  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 33401699 - 33401631
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaa 191  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||| ||||| ||||| || |||||||    
T  33401699 aagtaatttattttttcttatatgttttgcaatgctttaggaaaagaatgttgaagccatacttttgaa 33401631  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 9167974 - 9167906
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgttta 73  Q
    |||||||||||||||||| | ||||||||||| |||||  | |||||| ||||||||||| ||||||||    
T  9167974 ggagcaggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaagtagttgttta 9167906  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 33401817 - 33401761
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaa 61  Q
    ||||||||||||||||  || |||||||||||||||||| | |||||||||||||||    
T  33401817 ggagcaggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 31561686 - 31561755
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttag 74  Q
    |||||||||||||||||   |||||| ||||| |||||||| ||||||| |||||||||||  |||||||    
T  31561686 ggagcaggttgtggtcccatgaacaaatctacaatgttatgatggagaaaatggtaaagtttctgtttag 31561755  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33263852 - 33263793
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 64  Q
    |||| |||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||    
T  33263852 ggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 33263793  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33305689 - 33305630
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 64  Q
    |||||||| | ||||||| | | ||||||||| |||||||| ||||||||||||||||||    
T  33305689 ggagcagggtctggtccaaaaagcaactctacaatgttatggtggagaatatggtaaagt 33305630  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33411155 - 33411096
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 64  Q
    |||||||| | ||||||| | ||||||||||| | |||||| ||||||||||||||||||    
T  33411155 ggagcaggatctggtccaaaaaacaactctacaacgttatgatggagaatatggtaaagt 33411096  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 33643482 - 33643539
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaa 62  Q
    |||||||| ||||||||| | ||||| ||||| ||||| || ||||||||||||||||    
T  33643482 ggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 33643539  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 33411033 - 33410977
Alignment:
Q  141 tttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatga 197  Q
    |||||| |||| ||||| ||||||| |||||||| ||||| || |||||||||||||    
T  33411033 tttattttttgtaatgcattaggaagagcatgttgaagccatatttttgaatgatga 33410977  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 17439828 - 17439896
Alignment:
Q  123 aagtaatttattttttcttttattgtttgcaatgctttaggaaaagcatgttaaagccttagttttgaa 191  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||| ||||| ||||||||||    
T  17439828 aagtaatttatgttttcttttatttttcgcaatgctttaggaaaagcatgttgaagccatagttttgaa 17439896  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 17439705 - 17439774
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtttag 74  Q
    |||||||||||||||| |||||||||||||| ||||||||  ||| ||| ||||||||||||||||||||    
T  17439705 ggagcaggttgtggtctacagaacaactctatgatgttattatggcgaaaatggtaaagttgttgtttag 17439774  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 31497797 - 31497861
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttg 69  Q
    |||||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  31497797 ggagcaggttgtggttgaaagaacaattctacgatgttatgttggagaatatggtaaagtagttg 31497861  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 31477987 - 31478035
Alignment:
Q  150 tgcaatgctttaggaaaagcatgttaaagccttagttttgaatgatgaa 198  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  31477987 tgcaatgctttaggaaaagaatgttgaagccatagttttgaatcatgaa 31478035  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 31018997 - 31018931
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtt 71  Q
    ||||||||||||||| | | |||||  || || |||| |||||||||||||||||||||| ||||||    
T  31018997 ggagcaggttgtggttccccgaacatttcgacaatgtaatgttggagaatatggtaaagtagttgtt 31018931  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 31028875 - 31028809
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagttgttgtt 71  Q
    |||||||||||||||||   |||||  || || |||| |||||||||||||||||||||| ||||||    
T  31028875 ggagcaggttgtggtccctcgaacatttcaacaatgtaatgttggagaatatggtaaagtagttgtt 31028809  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 31483839 - 31483880
Alignment:
Q  152 caatgctttaggaaaagcatgttaaagccttagttttgaatg 193  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  31483839 caatgctttaggaaaagaatgttgaagccatagttttgaatg 31483880  T

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Target: scaffold0428 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 7963 - 7907
Alignment:
Q  5 ggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaa 61  Q
    |||||||| ||||||||| | ||||||||||| |||||| | |||||||||||||||    
T  7963 ggagcaggatgtggtccaaacaacaactctacaatgttacgatggagaatatggtaa 7907  T

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