View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11151_low_4 (Length: 539)
Name: NF11151_low_4
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 28289725 - 28289459
Alignment:
| Q |
14 |
atcacactttttgcagaaaataaatatttgtaagaatgaaatgtttggacaagattaaaataaccaatttccaacaattctatagaatcaaaataatcaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28289725 |
atcacactttttgcagaaaataaatatttgtaagaatgaaatgtttggacaagattaaaataaccaatttccaacaattctatagaatcaaaataatcaa |
28289626 |
T |
|
| Q |
114 |
tggttacctgcaaagcccatttttcaagattgccgtgagatgaaacggaacaaccaatatctttcttaagctccttaaatacattcttcaaaatggatgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28289625 |
tggttacctgcaaagcccatttttcaagattgccgtgagatggaatggaacaaccaatatctttcttaagctccttaaatacattcttcaaaatggatgg |
28289526 |
T |
|
| Q |
214 |
aactttaactccctccgaaaccgaatatgaaagccccattgcttgaccaggtccatcataaggttcc |
280 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28289525 |
aactttaactccctccggaaccgaatatgaaagccccattgcttgaccaggtccatcataaggttcc |
28289459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 345 - 524
Target Start/End: Complemental strand, 28289399 - 28289220
Alignment:
| Q |
345 |
tgaaatccacaaacctggccaagaatcacagccttaacggaatggaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaat |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28289399 |
tgaaatccacaaacctggccaagaatcacagccttaacggaatgaaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaat |
28289300 |
T |
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| Q |
445 |
ctttgaaagcgaaaatttcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcaccaggtaatgct |
524 |
Q |
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| T |
28289299 |
ctttgaaagcgaaaatctcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcaccaggtaatgct |
28289220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 346 - 520
Target Start/End: Complemental strand, 28281287 - 28281113
Alignment:
| Q |
346 |
gaaatccacaaacctggccaagaatcacagccttaacggaatggaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaatc |
445 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||| ||||| |||||||||||||| |||||||||||| ||||| |
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| T |
28281287 |
gaaatccacaaacctggccaaggatcacagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatc |
28281188 |
T |
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| Q |
446 |
tttgaaagcgaaaatttcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcaccaggtaa |
520 |
Q |
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||||||||| ||| |||||| |||||||||||||||||| ||||||| | ||||||||||||| ||||||| |
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| T |
28281187 |
tttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcgtacgatttctgaaattcatcaggtaa |
28281113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 117 - 276
Target Start/End: Complemental strand, 28300684 - 28300525
Alignment:
| Q |
117 |
ttacctgcaaagcccatttttcaagattgccgtgagatgaaacggaacaaccaatatctttcttaagctccttaaatacattcttcaaaatggatggaac |
216 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||| | || |||||||||| |||| ||||||||||||||||| ||| |||| | |||||||| |
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| T |
28300684 |
ttacctgcacagcccatttttcaagattaccatgagacggaatcgaacaaccaaggtcttgcttaagctccttaaatatattaaccaaactagatggaac |
28300585 |
T |
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| Q |
217 |
tttaactccctccgaaaccgaatatgaaagccccattgcttgaccaggtccatcataagg |
276 |
Q |
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||| ||||| || | |||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
28300584 |
tttgactccttcaggaaccgagaatgaaagccccattgcttgaccaggtccatgataagg |
28300525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 28278500 - 28278412
Alignment:
| Q |
347 |
aaatccacaaacctggccaagaatcacagccttaacggaatggaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggat |
435 |
Q |
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|||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28278500 |
aaatccacaaacctggccaagaatcacaaccttaacaggatgaaaaggagtagtattaagagcattgaaaatcaaatgctgaggaggat |
28278412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 439
Target Start/End: Complemental strand, 28300175 - 28300082
Alignment:
| Q |
346 |
gaaatccacaaacctggccaagaatcacagccttaacggaatggaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatac |
439 |
Q |
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|||||||||||||||||||||| |||||| ||||| | || || ||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28300175 |
gaaatccacaaacctggccaaggatcacaaccttagcagattgaaaaggggtagtattaagagcattgaaaatcaaatgcgcaggaggatatac |
28300082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 107 - 280
Target Start/End: Complemental strand, 28281524 - 28281351
Alignment:
| Q |
107 |
taatcaatggttacctgcaaagcccatttttcaagattgccgtgagatgaaacggaacaaccaatatctttcttaagctccttaaatacattcttcaaaa |
206 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||| ||| | ||| |||| ||| ||| ||||||| |||||||| ||||||||||||| |
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| T |
28281524 |
taatgaatggttacctgcagagcccatttttcaagattgccatgacgtagaaccttacaatcaagatcattcttaacctccttaagtacattcttcaaag |
28281425 |
T |
|
| Q |
207 |
tggatggaactttaactccctccgaaaccgaatatgaaagccccattgcttgaccaggtccatcataaggttcc |
280 |
Q |
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||||||||| || ||||| | |||||| |||| |||||||||||||||||||||||| |||||||||| |
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| T |
28281424 |
tggatggaaattggactcctcgaggaaccgagaatgatagccccattgcttgaccaggtccagaataaggttcc |
28281351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 346 - 520
Target Start/End: Original strand, 28746917 - 28747091
Alignment:
| Q |
346 |
gaaatccacaaacctggccaagaatcacagccttaacggaatggaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaatc |
445 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| |||| ||| || |||| ||||| ||||||||||| || |||||||||||| ||||| |
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| T |
28746917 |
gaaatccacaaacctggccaaggatcacagccttaacagaatgaaaagcagtggtgttaaaagcatcgaaaatcaaatacggaggaggatatacagaatc |
28747016 |
T |
|
| Q |
446 |
tttgaaagcgaaaatttcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcaccaggtaa |
520 |
Q |
| |
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||||| ||| ||| |||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
28747017 |
tttgagagcaaaatactcatttccgatgaacatgcaaagagcaggggcgtaaggtttctgaaattcaccaggtaa |
28747091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 350 - 512
Target Start/End: Complemental strand, 24729483 - 24729321
Alignment:
| Q |
350 |
tccacaaacctggccaagaatcacagccttaacggaatggaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaatctttg |
449 |
Q |
| |
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|||||||||||||| ||| |||||| ||| || ||||| ||||||| ||| |||| ||||| |||||||||||| | |||||||||||| ||||||||| |
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| T |
24729483 |
tccacaaacctggcaaaggatcacaacctagacagaatgaaaaggagaagtgttaaaagcatcgaaaatcaaatgtggaggaggatatacagaatctttg |
24729384 |
T |
|
| Q |
450 |
aaagcgaaaatttcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattca |
512 |
Q |
| |
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|||| |||| |||||| ||| |||||||||||||| ||| ||||| ||||||||||||| |
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|
| T |
24729383 |
aaagaaaaaaactcatttctgacaaacatgcaaagagcagggaagtaagatttctgaaattca |
24729321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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