View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11151_low_5 (Length: 518)
Name: NF11151_low_5
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Original strand, 11212295 - 11212788
Alignment:
| Q |
17 |
acagataattaagactagtaagttacaaacaaattgatatataacataaattgaatgtgcaactcaaacgaataaattgttcaccagaaactgcaatcag |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11212295 |
acagataattaagactaggaagttacaaacaaattgatatataacataaattgaatgtgcatctcaaacgaataaattgttcaccagaaactgcaatcag |
11212394 |
T |
|
| Q |
117 |
aaaacaatatgacaagctaaatcatgaataaatccttgtaatacatttaaagggtaaccagaaacggcaatctgaaaacacagtgatgtaagaaactcaa |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11212395 |
aaaacaatatgacaagctaaatcacgaataaatccttgtaatacatttaaagggtaaccagaaacggcaatctgaaaacacaatgatgtaagaaactcaa |
11212494 |
T |
|
| Q |
217 |
gtatttatcttataagtgcttatttacaagatatttatataatgcattcacatgcagtggagcaaacgcttcaggactctcttgacgtgaccgttctaga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| |
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| T |
11212495 |
gtatttatcttataagtgcttatttacaagatatttatataatgcattcacatgcagtggagcaaacgcttcaggactctcttaatgtgagcgttctaga |
11212594 |
T |
|
| Q |
317 |
gacttttctagctgctgttccgcttacctttttagtagagtgcgttcacgcacatgagaacgctagctctctccgcttatgttggggagatgagtccctc |
416 |
Q |
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||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11212595 |
gacttctgtagctgctgttccgcttatctttttagtagagtgcgttgacgcacatgagaacgctagctctctccgcttatgttagggagatgagtccctc |
11212694 |
T |
|
| Q |
417 |
gccgacccagatcaatgaatctcaatttgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgtttcggcctttgct |
510 |
Q |
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| T |
11212695 |
gccaacccagatcaatgaatctcaatctgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgtttcggccattgct |
11212788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 11191444 - 11191524
Alignment:
| Q |
60 |
acataaattgaatgtgcaactcaaacgaataaattgttcaccagaaactgcaatcagaaaacaatatgacaagctaaatca |
140 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
11191444 |
acataaactgaatgtgcaaatcaaacgaataaattgttcaccagaaactgcaatcagaaaacaatgtggcaagctaaatca |
11191524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 403 - 510
Target Start/End: Original strand, 18485087 - 18485194
Alignment:
| Q |
403 |
gagatgagtccctcgccgacccagatcaatgaatctcaatttgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgtttcgg |
502 |
Q |
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|||||||| ||||||| ||||| |||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||| |
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| T |
18485087 |
gagatgagcccctcgcttgcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacgg |
18485186 |
T |
|
| Q |
503 |
cctttgct |
510 |
Q |
| |
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|| ||||| |
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|
| T |
18485187 |
ccattgct |
18485194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 11158623 - 11158570
Alignment:
| Q |
163 |
ttaaagggtaaccagaaacggcaatctgaaaacacagtgatgtaagaaactcaa |
216 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||| |
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|
| T |
11158623 |
ttaaagggtaatcagaaactgcaatcagaaaacacggtgaagtaagaaactcaa |
11158570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 11191529 - 11191582
Alignment:
| Q |
202 |
atgtaagaaactcaagtatttatcttataagtgcttatttacaagatatttata |
255 |
Q |
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||||||||||||||||||||||| ||||||||||||| || ||||| |||||| |
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| T |
11191529 |
atgtaagaaactcaagtatttattatataagtgcttatgtataagatttttata |
11191582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 259 - 513
Target Start/End: Complemental strand, 34216210 - 34215950
Alignment:
| Q |
259 |
tgcattcacatgcagtggagcaaacgctt-caggactctcttgacgtgaccgttctagagacttttctagctgctgttccgcttacctttttagtagagt |
357 |
Q |
| |
|
|||||||| ||| |||||||||||| ||| ||||| |||| ||| || |||||||||||||| | |||||||||||||||||||||||| | ||||| |
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| T |
34216210 |
tgcattcaaatgtagtggagcaaacactttcaggattctcaggacacgagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagc |
34216111 |
T |
|
| Q |
358 |
gcgttcacgcacatgagaacgc-----tagctctctccgcttatgttggggagatgagtccctcgccgacccagatcaatgaatctcaatttgaggtgca |
452 |
Q |
| |
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|||| ||| |||||||| || ||||||||||||||| |||| || ||||||||||||||| | |||||||||||||||| |||| | ||||||| |
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| T |
34216110 |
acgttgacgtgcatgagaatgccgagttagctctctccgcttctgttaggtagatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgca |
34216011 |
T |
|
| Q |
453 |
tacaggttcgccccacctgcactcacaagccaaagtttctgctgtttcggcctttgcttct |
513 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||| |
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|
| T |
34216010 |
tacaggttcgccccgcctgcactcacaagccaaaatttctgttgtttcggccattgcttct |
34215950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 43948458 - 43948511
Alignment:
| Q |
163 |
ttaaagggtaaccagaaacggcaatctgaaaacacagtgatgtaagaaactcaa |
216 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||| |
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|
| T |
43948458 |
ttaaagggtaaccagaaactgcaatcagaaaacacaatgaagtaagaaactcaa |
43948511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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