View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11151_low_6 (Length: 400)
Name: NF11151_low_6
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_low_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 3094350 - 3093951
Alignment:
| Q |
1 |
ttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094350 |
ttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaag |
3094251 |
T |
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| Q |
101 |
tatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctt |
200 |
Q |
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| T |
3094250 |
tatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctt |
3094151 |
T |
|
| Q |
201 |
tgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094150 |
tgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcattt |
3094051 |
T |
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| Q |
301 |
ggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctcca |
400 |
Q |
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| T |
3094050 |
ggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctcca |
3093951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 3085504 - 3085110
Alignment:
| Q |
1 |
ttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaag |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085504 |
ttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattgaag |
3085405 |
T |
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| Q |
101 |
tatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctt |
200 |
Q |
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|||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || || |
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| T |
3085404 |
tatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatt |
3085305 |
T |
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| Q |
201 |
tgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcattt |
300 |
Q |
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| T |
3085304 |
tgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcattt |
3085205 |
T |
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| Q |
301 |
ggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggct |
395 |
Q |
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| T |
3085204 |
ggatcagtgtttcggagctccaaatgacctgttgaaattggacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggct |
3085110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
37 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
86 |
Q |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
15 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
59 |
Q |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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