View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11151_low_9 (Length: 274)
Name: NF11151_low_9
Description: NF11151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11151_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 41885769 - 41886018
Alignment:
| Q |
18 |
ttatcagctgttcgagactttagaatgggattagggtaatatccatgatcggtgagacgggaagtgtggatagatcggtggagaagtaaaccattaaggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41885769 |
ttatcagctgttcgagactttagaatgggattaggataatatccatgatcggtgagacgggaagtgtggatagatcggtggagaagtaaaccattaaggt |
41885868 |
T |
|
| Q |
118 |
tcaaaacaagcaacttcttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttgtttgtgatcatcatggtcaacatgatcagcttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
41885869 |
tcaaaacaagcaacttcttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttgtttgtgatcatcatggtcaata-gatcagcttc |
41885967 |
T |
|
| Q |
218 |
agagtctttgattctgatatttccatcactgcaactttccttctctgcttc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41885968 |
agagtctttgattctgatatttccatcactgcaactttccttctttgcttc |
41886018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 41828908 - 41828705
Alignment:
| Q |
65 |
atcggtgagacgggaagtgtggatagatcggtggagaagtaaaccattaaggttcaaaacaagcaacttcttcttctttggtgcaagattcagcttctca |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41828908 |
atcggtgagacgggaagtgtggatagatcggtggagaagtaaaccattaaggttcaaaacaagcaacttcttcttctttggtgcaagattcagcttctca |
41828809 |
T |
|
| Q |
165 |
agagaaagactcaattcttgtttgtgatcatcatggtcaacatgatcagcttcagagtctttgattctgatatttccatcactgcaactttccttctctg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41828808 |
agagaaagactcaattcttgtttgtgatcatcatggtcaacatgatcagcttcaaagtctttgattctgatatttccatcactgcaactttccttctttg |
41828709 |
T |
|
| Q |
265 |
cttc |
268 |
Q |
| |
|
|||| |
|
|
| T |
41828708 |
cttc |
41828705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 34453615 - 34453490
Alignment:
| Q |
20 |
atcagctgttcgagactttagaatgggattagggtaatatccatgatcggtgagacgggaagtgtggatagatcggtggagaagtaaaccattaaggttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| ||||| |||| |||| ||||||| |||||||||||||| || |||||||| |||||| |
|
|
| T |
34453615 |
atcagctgttcgagactttagaatgggattaggacagcatccctgatctgtgaaacggaaagtgtgaatagatcggtggagcagaaaaccattcaggttc |
34453516 |
T |
|
| Q |
120 |
aaaacaagcaacttcttcttctttgg |
145 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
34453515 |
aatacaagcaacttcttcttctttgg |
34453490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 41893734 - 41893802
Alignment:
| Q |
185 |
tttgtgatcatcatggtcaacatgatcagcttcagagtctttgattctgatatttccatcactgcaact |
253 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
41893734 |
tttgtgatcatcaaggtcaacatgattagcttcagagtctttgattttgatatttccgtcactgcaact |
41893802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 41896912 - 41896975
Alignment:
| Q |
205 |
catgatcagcttcagagtctttgattctgatatttccatcactgcaactttccttctctgcttc |
268 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||| |
|
|
| T |
41896912 |
catgatcagcttcagagtctttgattttgatatttccatcactgcaactctctttctttgcttc |
41896975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 41901962 - 41902011
Alignment:
| Q |
205 |
catgatcagcttca-gagtctttgattctgatatttccatcactgcaact |
253 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
41901962 |
catgatcagcttcaagagtctttgattttgatatttccatcactggaact |
41902011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University