View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_high_1 (Length: 422)
Name: NF11152_high_1
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 22085025 - 22084621
Alignment:
| Q |
1 |
ttatgtttgctaacaaatcaggaaggacagctttataacacatagagctttttgtgatgcattaactgaacaaagtgcaaagataacaacggttccggca |
100 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22085025 |
ttatgtgtgctaacaaatcaggaaggacagcttcataacacatagagctttttgtgatgcattaactgaacaaagtgcaaagataacaacggttccggca |
22084926 |
T |
|
| Q |
101 |
gctttaagcaactttcggaatgatcatttgacgaatactcaaactccaagaattcctcatatttttcctggttttcagtttcactcggaatttgttaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22084925 |
gctttaagcaactttcggaatgatcatttgacgaatactcaaactccaagaattcctcatatttttcctggttttcagtttcactcggaatttgttaatt |
22084826 |
T |
|
| Q |
201 |
cagcaacatcatcagaaccaccattgggaaattacactaacatttctcatcttcatcaaaattctgatataatgcaaacaatggatgtgtttggatcaca |
300 |
Q |
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| T |
22084825 |
cagcaacatcatcagaaccaccattgggaaattacactaacatttctcaacttcatcaaaattctgatataatgcaaacaatggatgtgtttggatcaca |
22084726 |
T |
|
| Q |
301 |
accacagtggctgaattataataatactaatctatctttgccaatgctacatggagtaatgaaacaagaacaagaagaaaacaaagatttgtctgctagt |
400 |
Q |
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| T |
22084725 |
accacagtggctgaattataataatgctaatctatctttgccaatgctacatggagtaatgaaacaagaacaagaagaaaacaaagatttgtctgctagt |
22084626 |
T |
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| Q |
401 |
gtaat |
405 |
Q |
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| T |
22084625 |
gtaat |
22084621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 31641960 - 31641899
Alignment:
| Q |
19 |
caggaaggacagctttataacacatagagctttttgtgatgcattaactgaacaaagtgcaa |
80 |
Q |
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||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||| |
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| T |
31641960 |
caggaaggatagcttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaa |
31641899 |
T |
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