View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_high_14 (Length: 323)
Name: NF11152_high_14
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 52274322 - 52274002
Alignment:
| Q |
5 |
atcaaagggtggaacaatcgattttattaagtttgtaggtcattgcagtctgacccaaaaaagtgtaaacagagacccgtatacctagctaaattaacat |
104 |
Q |
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| T |
52274322 |
atcaaagggtggaacaatcaattttattaagtttgtaggtcattgcagtctgacccaaaaaagtgtaaacagagacccgtatacctagctaaattaacat |
52274223 |
T |
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| Q |
105 |
gtgcaaaattaaattaaattgnnnnnnnnnn------tggcgttaaaataaaagcaatttcnnnnnnnnnnnnnngtatggcgcgttt--atagaatttt |
196 |
Q |
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| T |
52274222 |
gtgcaaaattaaattaaattaaattgaaaaaaaaaaatggcgttaaaataaaagcaatttctttttttt------gtatggcgcgtttttatagaatttt |
52274129 |
T |
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| Q |
197 |
caaacaaatttaccgccatttatttaggttaggtttggactagaaccatttcacgatccgttttaattcgacaaggttaaagcctttgtttccaaaacca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52274128 |
caaacaaatttaccgccatttatttaggttaggtttagactagaaccatttcacgatccgttttaattcgataaggttaaagcctttgtttccaaaacca |
52274029 |
T |
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| Q |
297 |
aaaagtgtcgttcagatctcagaatca |
323 |
Q |
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||||||||||||||||||||||||||| |
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| T |
52274028 |
aaaagtgtcgttcagatctcagaatca |
52274002 |
T |
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