View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_high_15 (Length: 319)
Name: NF11152_high_15
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_high_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 49247876 - 49247992
Alignment:
| Q |
203 |
ccaaagaagcggttgaggaagagattgtggccaaagaagaagaaaccaatgtgacaaaagtttcaacctctgaaggtgatgaacaaaatgatgtcaaatc |
302 |
Q |
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| T |
49247876 |
ccaaagaagcggttcaggaagagattgtggccaaagaagaagaaaccaatgtgacaaaagtttcaacctctgaaggtgatgaacaaaatgatatcaaatc |
49247975 |
T |
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| Q |
303 |
tgagcagcaggtatgta |
319 |
Q |
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| T |
49247976 |
tgagcagcaggtatgta |
49247992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 49247674 - 49247782
Alignment:
| Q |
1 |
caggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctccgcaagcagaaaccaaagtaacgactcaggaagaagaaaccaaag |
100 |
Q |
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| T |
49247674 |
caggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctcagcaagcagaaaccaaagtaacgactcaggaagaagaaaccaaag |
49247773 |
T |
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| Q |
101 |
taatggctc |
109 |
Q |
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| T |
49247774 |
taatggctc |
49247782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49247782 - 49247825
Alignment:
| Q |
1 |
caggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaa |
44 |
Q |
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| T |
49247782 |
caggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaa |
49247825 |
T |
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