View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_high_18 (Length: 309)
Name: NF11152_high_18
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 42639168 - 42639429
Alignment:
| Q |
30 |
ttattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccag |
129 |
Q |
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| T |
42639168 |
ttattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccag |
42639267 |
T |
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| Q |
130 |
ctggtccatagttgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagta |
229 |
Q |
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| T |
42639268 |
ctggtccatagttgtagttccaagatagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagta |
42639367 |
T |
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| Q |
230 |
gtcctttgatggaccatcaatctcttcagtatagcaaaaatctgcacaacattaatatcaca |
291 |
Q |
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| T |
42639368 |
gtcctttgatggaccatcaatctcttcagtatagcaaaaatctgcacaacattaatatcaca |
42639429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 42634093 - 42634336
Alignment:
| Q |
32 |
attcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagct |
131 |
Q |
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| T |
42634093 |
attcatccaataccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagct |
42634192 |
T |
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| Q |
132 |
ggtccatagttgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagtagt |
231 |
Q |
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| T |
42634193 |
ggtccgtaattaaagttccaagataattgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgctttcatcgcagtagt |
42634292 |
T |
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| Q |
232 |
cctttgatggaccatcaatctcttcagtatagcaaaaatctgca |
275 |
Q |
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| T |
42634293 |
cctttgatgcaccatccttctcttctatatagcaaaaatctgca |
42634336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 42628651 - 42628785
Alignment:
| Q |
158 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagtagtcctttgatggaccatcaatctcttca |
257 |
Q |
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| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatgtgtactctgcattgctttcatcacagtagtcttatgatgcaccatcaatctcttca |
42628750 |
T |
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| Q |
258 |
gtatagcaaaaatctgca-caacattaatatcaca |
291 |
Q |
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| T |
42628751 |
gtatagcagaaatctgcatcaacattaatttcaca |
42628785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
71 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
121 |
Q |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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