View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_high_2 (Length: 464)
Name: NF11152_high_2
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 53679263 - 53679693
Alignment:
| Q |
7 |
gaaccaaactgttattaaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaagtgaaa |
106 |
Q |
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| T |
53679263 |
gaaccaaactgttattgaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaactgaaa |
53679362 |
T |
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| Q |
107 |
ttgaaccagaatataactagcttaaaaacagaactgaaacatgacatatttaaaacgttaaacgtggtgaacaaaattgaaactttttaccaatctttca |
206 |
Q |
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| T |
53679363 |
ttgaaccagaatataactagcttaaaaacaaaactgaaacataacatatttaaaacgttaaacatggtgaacaaaattgaaattttttaccaatctttca |
53679462 |
T |
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| Q |
207 |
atcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaat |
306 |
Q |
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| T |
53679463 |
atcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaat |
53679562 |
T |
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| Q |
307 |
caaacgaaagtaagaaaggtgattcaatgttgattaagcaggtataattgaatttaaaatataattagattaaagacgttaataataaattacagattgg |
406 |
Q |
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| T |
53679563 |
caaacgaaagtaagaaaggtgattcggtgttgattaagcaggtataattgaatttaaaatataattagattaaaaacgttaataataaattacagattgg |
53679662 |
T |
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| Q |
407 |
aaataaatatgaaatgggagatttagaatga |
437 |
Q |
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| T |
53679663 |
aaataaatatgaaatgggagattgagaatga |
53679693 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 2045066 - 2045022
Alignment:
| Q |
50 |
actgaaccatatgaaaaggtctggttactaactgaactgttttaa |
94 |
Q |
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| T |
2045066 |
actgaaccatatgaaaaggattggttattagctgaactgttttaa |
2045022 |
T |
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