View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_high_4 (Length: 411)
Name: NF11152_high_4
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 49248559 - 49248153
Alignment:
| Q |
1 |
ataaacaaggttagaaattgaaattatatacactttatatcaagagggnnnnnnncatggtatatagaagtacttttagatta-tacaaaaacaaagaac |
99 |
Q |
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| T |
49248559 |
ataaacaaggttagaaattgaaattatatacactttatatcaagagggaaacaaacatggtatatagaagtacttttagattaatacaaaaacaaagaac |
49248460 |
T |
|
| Q |
100 |
acgagattgagaagtttttggtgccttaacatagattaatcaaaactgattatagtatgtatttcatttgaataaca--tgtatgaggactcagagaata |
197 |
Q |
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| T |
49248459 |
acgagattgagaagtttttggtgccttaacatagattaatcaat-ctgattatagtatgtatttcatttgaataactcttgtatgaggactcagagaata |
49248361 |
T |
|
| Q |
198 |
agaacgtacaatgcatgttcaagcttgacaacatgattaatactactttgtaacattgtcaaatagaaaacatcctcaattatatattgaagttgctact |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49248360 |
agaacgtacaatgcatgttcaagcttgacaacatgattaatactactttgtaacattgtcaaatagaaaacatcctcaattatatattgaagttgctact |
49248261 |
T |
|
| Q |
298 |
tctgtattatctccatccagtttcgattcttcattgtgcgatctgcatcacaaacatgtttcaattaaagttattaaaaaattgactaattaataccata |
397 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49248260 |
tctgtattatctccatccagtttcgattcttcattgtcc---ctgcatcagaaacatgtttcaattaaagttattaaaaaattgactaattaataccata |
49248164 |
T |
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| Q |
398 |
tatgttactcc |
408 |
Q |
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||||||||||| |
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| T |
49248163 |
tatgttactcc |
49248153 |
T |
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