View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11152_high_5 (Length: 396)

Name: NF11152_high_5
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11152_high_5
NF11152_high_5
[»] chr3 (8 HSPs)
chr3 (5-363)||(29821876-29822219)
chr3 (278-329)||(49333873-49333923)
chr3 (280-354)||(54653010-54653085)
chr3 (280-333)||(43102304-43102357)
chr3 (278-373)||(33149973-33150069)
chr3 (278-333)||(47807849-47807904)
chr3 (278-323)||(12992033-12992077)
chr3 (278-323)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (135-277)||(40880222-40880364)
chr5 (278-333)||(1663507-1663562)
chr5 (278-327)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (280-359)||(118777-118856)
chr8 (278-333)||(5777111-5777166)
chr8 (278-323)||(45436181-45436225)
chr8 (289-333)||(7487145-7487188)
[»] chr6 (2 HSPs)
chr6 (326-370)||(24546535-24546579)
chr6 (4-37)||(4030718-4030751)
[»] chr1 (2 HSPs)
chr1 (280-354)||(3978364-3978439)
chr1 (278-323)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (278-354)||(38407199-38407275)
chr7 (280-333)||(19279339-19279392)
chr7 (278-327)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (278-354)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (280-354)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 29821876 - 29822219
Alignment:
Q  5 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtttagaattatgtagtttag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  29821876 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtt---------------tag 29821960  T
Q  105 taactgctattttctaggaagttagttatcatgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggcc 204  Q
    ||||| | |||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  29821961 taactaccattttctaggaagttagtttccatgtaatatgtatttgaatgattgtacttttatggaatcatgaagaaaatattcagaaaaacttccagcc 29822060  T
Q  205 ttcctttcttctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatttatcatgttgttgttgaaattgagattggggt 304  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  29822061 ttcctttcttttttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatctatcatattgttgttgaaattgagattggggt 29822160  T
Q  305 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822161 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 29822219  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 49333873 - 49333923
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgat 329  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  49333873 tgttgttgttgaaattgagatt-gggtgtttgtggttgttgaaaaggttgat 49333923  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 54653085 - 54653010
Alignment:
Q  280 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 354  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  54653085 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 54653010  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 43102357 - 43102304
Alignment:
Q  280 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 333  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||    
T  43102357 ttgttgttgaaattgggattggaatgtttgtggttgttgaaaaggttgttgttg 43102304  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 373
Target Start/End: Complemental strand, 33150069 - 33149973
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaa-tgttcttgttgttgatgatg 373  Q
    |||||||||||||||||  |||||||||||| ||||| ||| |||||||| || || || |||||| || || ||| |||| ||||||||| |||||    
T  33150069 tgttgttgttgaaattgccattggggtgtttatggttcttgcaaaggttgctgctgttgttattgtgattaaaaaattgttgttgttgttgttgatg 33149973  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 47807849 - 47807904
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 333  Q
    ||||||||||||||||||||||  | ||||||||||| | |||||||||| |||||    
T  47807849 tgttgttgttgaaattgagattaagatgtttgtggttgtcgaaaaggttgttgttg 47807904  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 12992033 - 12992077
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 323  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12992033 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 12992077  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 50259469 - 50259425
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 323  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50259469 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 50259425  T

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Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 135 - 277
Target Start/End: Complemental strand, 40880364 - 40880222
Alignment:
Q  135 atgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatccctt 234  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||    
T  40880364 atgtaatgtgtatttgaatgattgtacgtttgttgaatcattaagaaaatattcataaaaacttacagccttcctttcttctttaggagactcatccctt 40880265  T
Q  235 ctcgaattggaataatcactacttctctaacaatcatttatca 277  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  40880264 ctcgaattgggataatcactacttctttaacaatcatctatca 40880222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 1663562 - 1663507
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 333  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| |||| |||||    
T  1663562 tgttgttgttgaaattgagattgagatgtttgtggttgttgaaaaagttgttgttg 1663507  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 10085037 - 10084988
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 327  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  10085037 tgttgttgttgaaattgagattggaatgttcgtggttgttgaaaaggttg 10084988  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 118777 - 118856
Alignment:
Q  280 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaatgttct 359  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||| |||||||||| ||||    
T  118777 ttgttattgaaattgagattggggtgtttatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaattttct 118856  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 5777111 - 5777166
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 333  Q
    ||||||||||| ||||||||||||| |||||| | || |||||||||||| |||||    
T  5777111 tgttgttgttggaattgagattgggttgtttgagattgttgaaaaggttgttgttg 5777166  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 45436181 - 45436225
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 323  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  45436181 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 45436225  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 7487145 - 7487188
Alignment:
Q  289 aaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 333  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  7487145 aaattgagattggggtgtttatgg-ttatgaaaaggttgatgttg 7487188  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 24546535 - 24546579
Alignment:
Q  326 tgatgttgctgatattgtaatgaagaaatgttcttgttgttgatg 370  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  24546535 tgatgttgctggtattgtgatgaagaaatgttcttgttgttgatg 24546579  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 4030718 - 4030751
Alignment:
Q  4 gacatcatcaaaattatatatgttaaatagttta 37  Q
    |||||||||||||||||| |||||||||||||||    
T  4030718 gacatcatcaaaattatacatgttaaatagttta 4030751  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 3978439 - 3978364
Alignment:
Q  280 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 354  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  3978439 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 3978364  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 38961773 - 38961817
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 323  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  38961773 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 38961817  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 38407199 - 38407275
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 354  Q
    |||||||||||||||||||||| ||||| || ||| || ||||||||||||||||| || | ||||| ||||||||||    
T  38407199 tgttgttgttgaaattgagattagggtgattatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaat 38407275  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 19279339 - 19279392
Alignment:
Q  280 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 333  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||||| |||||    
T  19279339 ttgttgttaaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttg 19279392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 25154619 - 25154668
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 327  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  25154619 tgttgttgttggatttgagattggagtgtttgtggttgttgaaaaagttg 25154668  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 26791090 - 26791166
Alignment:
Q  278 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 354  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  26791090 tgttgctgttgaaattgagat-gggatgtttgtggttgttgaaaaggttgttgttgttgttcatggtaatgaagaaat 26791166  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 34039702 - 34039627
Alignment:
Q  280 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 354  Q
    ||||||||||||||| ||||||  | ||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  34039702 ttgttgttgaaattgggattggaatatttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 34039627  T

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