View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11152_high_6 (Length: 373)

Name: NF11152_high_6
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11152_high_6
NF11152_high_6
[»] chr1 (9 HSPs)
chr1 (20-351)||(8936168-8936499)
chr1 (20-351)||(8959707-8960020)
chr1 (20-351)||(8924545-8924858)
chr1 (20-151)||(9306868-9306999)
chr1 (52-134)||(8945879-8945961)
chr1 (37-151)||(9245105-9245219)
chr1 (21-145)||(9475326-9475450)
chr1 (20-151)||(9335503-9335634)
chr1 (37-145)||(9359247-9359355)
[»] chr3 (1 HSPs)
chr3 (51-151)||(9168398-9168495)
[»] chr6 (1 HSPs)
chr6 (72-145)||(15912868-15912941)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 8936499 - 8936168
Alignment:
Q  20 aaaacaatataacaactttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattca 119  Q
    ||||||| || ||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8936499 aaaacaacatcacaatgttaactctgttgtcgggtaaatactatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattga 8936400  T
Q  120 agagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttatatcttcaattctgttgatccatatcaaacttaccag 219  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  8936399 agagggtgattgctccaccattcctcactattacttatacaattataatttcagcagctcttatatctacgattctgttgatccatatcaaacttaccag 8936300  T
Q  220 aatagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacatcattacaaatgttccagcacgtaattt 319  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8936299 agaagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacaacattacaaatgttccagcacgtaattt 8936200  T
Q  320 acatgaattgtagcagtcctgtgagtgatgat 351  Q
    ||||||||||||||||||||||||| ||||||    
T  8936199 acatgaattgtagcagtcctgtgagggatgat 8936168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 8960020 - 8959707
Alignment:
Q  20 aaaacaatataacaactttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattca 119  Q
    ||||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8960020 aaaacaacatcacaaccttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattga 8959921  T
Q  120 agagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttatatcttcaattctgttgatccatatcaaacttaccag 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  8959920 agagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttatatctacgattctgttgatccatatcaaacttaccag 8959821  T
Q  220 aatagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacatcattacaaatgttccagcacgtaattt 319  Q
    | |||||||||||||||||||| |||| || || ||  ||||||||||||||                  ||||||||||||||||||||||||||||||    
T  8959820 agtagaatagttgatactactagatataaatattcaccagctcttactttgg------------------catcattacaaatgttccagcacgtaattt 8959739  T
Q  320 acatgaattgtagcagtcctgtgagtgatgat 351  Q
    ||||||||||||||||||||||||| ||||||    
T  8959738 acatgaattgtagcagtcctgtgagggatgat 8959707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 8924858 - 8924545
Alignment:
Q  20 aaaacaatataacaactttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattca 119  Q
    ||||||| ||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||  |  ||||||||||||||||| |    
T  8924858 aaaacaacataacaactttaactctattgtcgagtaaatactatgtgaaatcaatcaactacaataactacacaatcagaatagttgatcccggaattga 8924759  T
Q  120 agagggtgattgctccaccattcctcactattacttgtacaattataatttcagcagctcttatatcttcaattctgttgatccatatcaaacttaccag 219  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8924758 agagggtgattgctcctcctttcctcgctattacttatacaattataatttcagcagctcttatatcttcgattctgttgatccatatcaaacataccag 8924659  T
Q  220 aatagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacatcattacaaatgttccagcacgtaattt 319  Q
    |  ||||||||||||||||||| |||| || || ||  ||||||||||||||                  ||||||||||||||||||||||||||||||    
T  8924658 agcagaatagttgatactactagatataaatattcaccagctcttactttgg------------------catcattacaaatgttccagcacgtaattt 8924577  T
Q  320 acatgaattgtagcagtcctgtgagtgatgat 351  Q
    ||||||||||||||||||||||||| ||||||    
T  8924576 acatgaattgtagcagtcctgtgagggatgat 8924545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 9306868 - 9306999
Alignment:
Q  20 aaaacaatataacaactttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattca 119  Q
    ||||||| || ||||| ||||||||||| || ||||||||||||| |||||||||||||||||  |||||| ||||  |  |||||||||  ||||||||    
T  9306868 aaaacaacatcacaacgttaactttgttttcaggtaaatactatgtgaaatcaatcaactacagaaactactcaatgagagtagttgatcttggaattca 9306967  T
Q  120 agagggtgattgctccaccattcctcactatt 151  Q
    ||| |||||||||||| |||| |||| |||||    
T  9306968 agaaggtgattgctcctccatgcctcgctatt 9306999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 8945961 - 8945879
Alignment:
Q  52 ggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctc 134  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||    
T  8945961 ggtaaataccatgtaaaatcaatcaactacaataactacacaattcggttagttgatcctggaataaaagaaggtgattgctc 8945879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 9245105 - 9245219
Alignment:
Q  37 ttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctcca 136  Q
    |||||| |||| |||||||| ||||||| |||  ||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||  |||||||     
T  9245105 ttaactctgttttcgggtaagtactatgtgaaggcaatcaactacaacaactacacaattttgttagttgatcccggaattgaagagggtagttgctcct 9245204  T
Q  137 ccattcctcactatt 151  Q
    || |||||| |||||    
T  9245205 cccttcctcgctatt 9245219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 9475326 - 9475450
Alignment:
Q  21 aaacaatataacaactttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaa 120  Q
    |||||| || ||||| ||||||||| | |||||||| ||| ||| ||| |||||||||||| |||||||||||||  |  |||||||||| |||||||||    
T  9475326 aaacaacatcacaacgttaactttgctttcgggtaactacaatgtgaagtcaatcaactacgataactacacaatcagactagttgatcctggaattcaa 9475425  T
Q  121 gagggtgattgctccaccattcctc 145  Q
    |||| |||||||| | |||||||||    
T  9475426 gaggatgattgcttctccattcctc 9475450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 9335634 - 9335503
Alignment:
Q  20 aaaacaatataacaactttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattca 119  Q
    ||||||| || ||| | |||||| |||| || ||||||||||||| | |   |||||||||||  |||||||||||||||||||||||||| |||||| |    
T  9335634 aaaacaacatcacagcgttaactctgttttcaggtaaatactatgtgcaggaaatcaactacataaactacacaattcggttagttgatccaggaattga 9335535  T
Q  120 agagggtgattgctccaccattcctcactatt 151  Q
    ||| ||||||| |||| ||||||||| |||||    
T  9335534 agaaggtgattactcctccattcctcgctatt 9335503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 9359355 - 9359247
Alignment:
Q  37 ttaactttgttgtcgggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctcca 136  Q
    |||||| |||| || ||||||||||||| | |   ||||||||||   || |||||||||||| |||||||||| | |||| |||||||| ||||||||     
T  9359355 ttaactctgttttcaggtaaatactatgtgcaggaaatcaactacgtaaattacacaattcggctagttgatccagtaattgaagagggtaattgctcct 9359256  T
Q  137 ccattcctc 145  Q
    |||||||||    
T  9359255 ccattcctc 9359247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 9168495 - 9168398
Alignment:
Q  51 gggtaaatactatgcgaaatcaatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactat 150  Q
    |||||||||||||| |||||||||||||||||| |||||||||||  |  |||||||||| |||||  |||| ||||||||   ||||||||||| ||||    
T  9168495 gggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctggaatagaagaaggtgattg---caccattcctcgctat 9168399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 15912868 - 15912941
Alignment:
Q  72 aatcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc 145  Q
    ||||||||| || |||||||||||| ||||||||||| ||||  | |||||||||||||||||| |||||||||    
T  15912868 aatcaactataaaaactacacaattaggttagttgatgccgggttgcaagagggtgattgctcctccattcctc 15912941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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