View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_high_7 (Length: 357)
Name: NF11152_high_7
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_high_7 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 24697026 - 24696675
Alignment:
| Q |
6 |
agtagcatagggagttgaccataaagtagttgcttacagtatttatactgaaatggttcgttgcatcaataactctgaggcgtttttcattaaacagatg |
105 |
Q |
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| T |
24697026 |
agtagcattgggagttgaccataaagtagttgcttacagtatttatactgaaatggttcgttgcatcaataactctgaggcgtttttcattaaacagatg |
24696927 |
T |
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| Q |
106 |
tggataatggtgtggaattcattcacatgccgtcaagaatgggttgtaagatttttgaaccgcaattacaacttcgttgcaacggtggtctctgttctcg |
205 |
Q |
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| T |
24696926 |
tggataatggtgtggaattcattcacatgccgtcaagaatgggttgtaagatttttgaaccgcaactacaacttcgttgcaacggtggtctctgttctcg |
24696827 |
T |
|
| Q |
206 |
ctgttgtgcagactgtttatacagtcctaccgtattattttcccaaatagctcctctccattgcttgaagaagacatgtttcaattttctgctatttgca |
305 |
Q |
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| T |
24696826 |
ctgttgtgcagactgtttatacagtcctaccgtattattttcccaaatagctcctctccattgcttgaagaagacatgtttcaattttctgctatttgca |
24696727 |
T |
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| Q |
306 |
tttctctgtgatttagaaaagacccaccacatcatatgggacatgttctcat |
357 |
Q |
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| T |
24696726 |
tttctctgtgatttagaaaagacccaccacttcatatgggacatgttctcat |
24696675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 83 - 326
Target Start/End: Complemental strand, 24726767 - 24726526
Alignment:
| Q |
83 |
aggcgtttttcattaaacagatgtggataatggtgtggaattcattcacatgccgtcaagaatgggttgtaagatttttgaaccgcaattacaacttcgt |
182 |
Q |
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| T |
24726767 |
aggcgtttatctttaaacaaatgtggagaacagtttggacttcgttcacataccgtcaagaatggcttttaacatttctgaatcgcaattacaacttcgt |
24726668 |
T |
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| Q |
183 |
tgcaacggtggtctctgttctcgctgttgtgcagactgtttatacagtcctaccgtattattttcccaaatagctcctctccattgcttgaagaagacat |
282 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||| ||||||||||||| ||||||| | |
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| T |
24726667 |
tgcaatggtggtctctgttctcgctgttgtgcagactgtttatacaatcctcgcatattattttcccaagtagttcctctccattgcctgaagaatgccc |
24726568 |
T |
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| Q |
283 |
gtttcaattttctgctatttgcatttctctgtgatttagaaaag |
326 |
Q |
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| T |
24726567 |
attttgattttctgccatttgcatt--tatgtgatttagaaaag |
24726526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 275
Target Start/End: Complemental strand, 24797463 - 24797340
Alignment:
| Q |
152 |
taagatttttgaaccgcaattacaacttcgttgcaacggtggtctctgttctcgctgttgtgcagactgtttatacagtcctaccgtattattttcccaa |
251 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||| | ||||| ||||||||||||| |||||| || ||||| | ||| |||||||||| |
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| T |
24797463 |
taagatttttgaaccccaattacaacttcgttgcaacggttctctttattctcactgttgtgcagacagtttatgcaatcctagcctataattttcccaa |
24797364 |
T |
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| Q |
252 |
atagctcctctccattgcttgaag |
275 |
Q |
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||| ||||||||||||||||||| |
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| T |
24797363 |
ataattcctctccattgcttgaag |
24797340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 24537802 - 24537923
Alignment:
| Q |
154 |
agatttttgaaccgcaattacaacttcgttgcaacggtggtctctgttctcgctgttgtgcagactgtttatacagtcctaccgtattattttcccaaat |
253 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| || ||||| | ||| |||||||||||| |
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| T |
24537802 |
agatttatgaaccgcaattacaacttcgttgcaacggttctctctattctcactgttgtgcagacagtttatgcaatcctagcctataattttcccaaat |
24537901 |
T |
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| Q |
254 |
agctcctctccattgcttgaag |
275 |
Q |
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| T |
24537902 |
aattcatctccattgcttgaag |
24537923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 275
Target Start/End: Complemental strand, 24826561 - 24826438
Alignment:
| Q |
152 |
taagatttttgaaccgcaattacaacttcgttgcaacggtggtctctgttctcgctgttgtgcagactgtttatacagtcctaccgtattattttcccaa |
251 |
Q |
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|||||||| |||||| | ||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||||||||| | | ||||| || ||| |
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| T |
24826561 |
taagatttatgaaccacgattacaacttccctgcaacgctggtgtctgttctcgctattgtgcagactgtttatacagtcctagcattttattatcacaa |
24826462 |
T |
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| Q |
252 |
atagctcctctccattgcttgaag |
275 |
Q |
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||| || ||| |||||||||||| |
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| T |
24826461 |
gtagttcatctacattgcttgaag |
24826438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 24854637 - 24854420
Alignment:
| Q |
106 |
tggataatggtgtggaattcattcacatgcc---gtcaagaatgggttgtaagatttttgaaccgcaattacaacttcgttgcaacggtggtctctgttc |
202 |
Q |
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|||| ||| |||| |||||||||||||| || |||| ||||| || |||||||| ||||||| ||||||||||| ||||| ||| || |||||||| |
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| T |
24854637 |
tggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaaccgtaattacaactttgttgccacgctgctctctgttt |
24854538 |
T |
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| Q |
203 |
tcgctgttgtgcagactgtttatacagtcctaccgtattattttcccaaa---tagctcctctccattgcttgaagaagacatgtttcaattttctgcta |
299 |
Q |
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| T |
24854537 |
ccattgttgtgcagactgtttatacaatcgtagcatattatttccccaaacaataatttctctccattgcttgaagaaggcgcattttgattttctgcta |
24854438 |
T |
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| Q |
300 |
tttgcatttctctgtgat |
317 |
Q |
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||| ||||||| |||||| |
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| T |
24854437 |
ttttcatttctatgtgat |
24854420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 24748314 - 24748238
Alignment:
| Q |
197 |
ctgttctcgctgttgtgcagactgtttatacagtcctaccgtattattttcccaaatagctcctctccattgcttga |
273 |
Q |
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|||||||| |||||||||| | |||||| || ||||| | ||| ||||||||||||| |||| |||||||||||| |
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| T |
24748314 |
ctgttctcactgttgtgcatatagtttatgcattcctagcttataattttcccaaataattcctgtccattgcttga |
24748238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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