View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11152_low_1 (Length: 670)
Name: NF11152_low_1
Description: NF11152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11152_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 86 - 658
Target Start/End: Complemental strand, 28233054 - 28232475
Alignment:
| Q |
86 |
tcttataaggcttatatgaatcatttttt-ggcaccatctaagttgttcatgtcttataaggcttgaatgcatcgtctttgacttaatatctatacttga |
184 |
Q |
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| T |
28233054 |
tcttataaggcttatatgaatcatttttttggcaccatctaagtaggtcatgtcttataaagcttgaatgcatcgtctttggcttaaaatctacacttgg |
28232955 |
T |
|
| Q |
185 |
ctttttgaacagtcctataaatgcgaagcaagcaaatcatagtaattttttgttaatggcacatttattaaacaaatcactcatacaagaagtatgaaat |
284 |
Q |
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| T |
28232954 |
ctttttgaacagtcctacaaatgcgaagcaagcaaatcatagtaattttttgttaatggcacatttattaaacaaatcactcatacaagaagtatgaaat |
28232855 |
T |
|
| Q |
285 |
gattgaggataaacctacaacaatacaaacatgccgtaaaccaa-atagcaagtaaaacaaagtgacaaggatagcaagtaaaacaaaccctaaaaagaa |
383 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28232854 |
gattgaggataaacctacaacaatacaaacatgcagtaaaccaatatagcaagtaaaacaaagtgacaaggatagcaagtaaaacaaaccctaaaaagaa |
28232755 |
T |
|
| Q |
384 |
caagaactatgacttatcaggtgttacactaaagtactaaacatatgtacatatgctactaaactagtcaaattgcaagttacttttttag--------- |
474 |
Q |
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| T |
28232754 |
caagaactatgacttatcaggtgttacactaaacgactaaacatatgtacatatgctactaaactagtcaaattgcaagttacttttttagcatttttta |
28232655 |
T |
|
| Q |
475 |
-catgataataacgaggaagatccgttttcaaactcttttgttttcatgtattctttctgaattttcacttgcaagttggcaacttgatcagtcacatta |
573 |
Q |
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| T |
28232654 |
acatgataataacgaggaagatccgttttcaaattcttttgttt-----tattctttctgaattttcacttgcaagttggcaacttgatcagtcacatta |
28232560 |
T |
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| Q |
574 |
tgttttttacaaaatcaaattccatgatgcaataaaaaggtaaatacaatatccaagcatatctttaacaaaagagacttgatgt |
658 |
Q |
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| T |
28232559 |
tgttttttacaaaatcaaattccatgatgcaataaaaaggtaaatacaatatccaagcatatctttaacaaaagagactttatgt |
28232475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 28233125 - 28233088
Alignment:
| Q |
16 |
aagagatcattaatacctcattacatcaaatgacattc |
53 |
Q |
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| T |
28233125 |
aagagatcattaatacctcattacatcaaatgacattc |
28233088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 15133402 - 15133443
Alignment:
| Q |
239 |
aatggcacatttattaaacaaatcactcatacaagaagtatg |
280 |
Q |
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| T |
15133402 |
aatggcacatttattaaacaattcacccatacaagcagtatg |
15133443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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