View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11153_low_1 (Length: 632)
Name: NF11153_low_1
Description: NF11153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11153_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 16 - 616
Target Start/End: Original strand, 40092895 - 40093494
Alignment:
| Q |
16 |
cctgtgttattgaaactcaaatgaagttgaggttgattttaaaacaagttaaaacatgagttgatcgttgannnnnnnnnnnnnnnnnnnggagggagag |
115 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
40092895 |
cctgtgttattgaaactcaaatgaagtcgaggttgattttaaaacaagttaaaacatgagttgatcattgatttttttttttatttttttt-agggagag |
40092993 |
T |
|
| Q |
116 |
ttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattattgatgaatt |
215 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092994 |
ttgatgatggatgttccttctaaaaatgttcataatttattttttcaattaagttcttgaattattaaataataactttctatgatattattgatgaatt |
40093093 |
T |
|
| Q |
216 |
cttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgttgagttta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40093094 |
cttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgctgagttta |
40093193 |
T |
|
| Q |
316 |
acagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093194 |
acagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacat |
40093293 |
T |
|
| Q |
416 |
gaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
515 |
Q |
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| T |
40093294 |
gaaccatatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
40093393 |
T |
|
| Q |
516 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40093394 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttt |
40093493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 108 - 577
Target Start/End: Original strand, 40062329 - 40062803
Alignment:
| Q |
108 |
agggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattatt |
207 |
Q |
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||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40062329 |
agggagagttgatcttggatgttccgtccaaaaatgttcataatttattgtttccattaagttcttgaattattaaattataactttcgatgatattatt |
40062428 |
T |
|
| Q |
208 |
gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgt |
307 |
Q |
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| T |
40062429 |
gatgaattcttagggagtcacaccgggaacaaagacaaacctaagcttaatgtggacatcccaatcaaagtaatttatggaaataaccaaattgatctgc |
40062528 |
T |
|
| Q |
308 |
tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactata |
407 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
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| T |
40062529 |
tgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcattactata |
40062628 |
T |
|
| Q |
408 |
t-----ctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaag |
502 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
40062629 |
tctaagctaacatgaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaag |
40062728 |
T |
|
| Q |
503 |
aatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact |
577 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
40062729 |
aatggcaacaacactcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagact |
40062803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 363 - 590
Target Start/End: Original strand, 40080933 - 40081166
Alignment:
| Q |
363 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacaca |
457 |
Q |
| |
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|||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacaca |
40081032 |
T |
|
| Q |
458 |
tggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtc |
557 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
40081033 |
gtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatc |
40081132 |
T |
|
| Q |
558 |
tt-cacttttgatcgaagactatttattagtctt |
590 |
Q |
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|| | ||||||||||| ||||||||||| |||| |
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| T |
40081133 |
ttaaatttttgatcgaaaactatttattattctt |
40081166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 40080793 - 40080912
Alignment:
| Q |
248 |
ctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgttgagtttaacagttggacttcaggttcagcttttcttgtt |
347 |
Q |
| |
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|||||||||||| ||||||||| ||| || | |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40080793 |
ctaagcttaatgtggacatcccaatcgcactagtttccggaaagaacaaaattgatctactgagtttaacagttggacttcaggttcagcttttcttgtt |
40080892 |
T |
|
| Q |
348 |
tttagtttccaattatgcat |
367 |
Q |
| |
|
||||||||| || ||||||| |
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| T |
40080893 |
tttagtttctaaatatgcat |
40080912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 40062245 - 40062311
Alignment:
| Q |
16 |
cctgtgttattgaaactcaaatgaagttgaggttgattttaaaacaagtt-aaaacatgagttgatc |
81 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
40062245 |
cctgtattattgaaactcaaatgaagtcaaggttgattttaaaacaagttaaaaatatgagttgatc |
40062311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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