View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11153_low_4 (Length: 261)
Name: NF11153_low_4
Description: NF11153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11153_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 13973849 - 13973613
Alignment:
| Q |
16 |
atttaaaaccttattccatgtagtatttgagaagatctgtaaacacaataaaataaggagctccatgtatttctcgtgttaagattccccttctaattgg |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13973849 |
atttaaaaccttattccatgtagtgtttgagaagatctgtaaacacaataaaataaggagctccatgtatttctcgtgttaagattccccttctaattgg |
13973750 |
T |
|
| Q |
116 |
ccttaataaggaacctgaagttttat-------gactcaaagtatgcatgattacattgaagggaagatgggaaatgatgctatgatgatgatgattcgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13973749 |
ccttaataaggaacctgaagttttatggtcaaagactcaaagtatgcatgattacattgaagggaagatgggaaatgatgatatgatgatgatgattcgt |
13973650 |
T |
|
| Q |
209 |
tgtccttgaatgaggacaaactttttcatatggtaac |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13973649 |
tgtccttgaatgaggacaaactttttcatatggtaac |
13973613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University