View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_high_16 (Length: 253)
Name: NF11154_high_16
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 50338467 - 50338625
Alignment:
| Q |
21 |
agtaccattgctcaaagaggagttcaattggttggaacggcacatggaacaaccattgagagcataatgaagaatccttatcttcagatccttgttggtg |
120 |
Q |
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| T |
50338467 |
agtaccattgctcaaagaggagttcaattggttggaacggcacatggaacaaccattgaaagcataatgaagaatccttatcttcagatccttgttggtg |
50338566 |
T |
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| Q |
121 |
gtatagaggtgcaaaagctactcttatttattttccttcaagtttatgatttataataa |
179 |
Q |
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| T |
50338567 |
gtatagaggtgcaaaagctactcttatttattttccttcaagtttatgatttataataa |
50338625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 50338702 - 50338751
Alignment:
| Q |
188 |
gtagcatatcctaatgaaatatgtatagcgcgtgtccacgttaatgatgt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50338702 |
gtagcatatcctaatgaaatatgtatagcgcgtgtccacgttaatgatgt |
50338751 |
T |
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