View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_high_19 (Length: 247)
Name: NF11154_high_19
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_high_19 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 45643121 - 45642891
Alignment:
| Q |
17 |
aagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaaggttaagccttcttctgctgctccttc |
116 |
Q |
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| T |
45643121 |
aagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaaggttaagccttcttctgctgctccttc |
45643022 |
T |
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| Q |
117 |
tgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagct |
216 |
Q |
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| T |
45643021 |
tgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaacaaccaccaccactactcctaccatacaaagtgcatcttcagct |
45642922 |
T |
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| Q |
217 |
actaccatctcaccaactgttgctttctttt |
247 |
Q |
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| T |
45642921 |
actaccatctcaccaactgttgctttctttt |
45642891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 45650382 - 45650149
Alignment:
| Q |
20 |
aagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaaggttaagccttcttctg---------ctgc |
110 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||| |||||| |||||||| |||| |
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| T |
45650382 |
aagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaagttaaggcttcttctagtgcttcttctgc |
45650283 |
T |
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| Q |
111 |
tccttctgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatct |
210 |
Q |
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| T |
45650282 |
tccttctgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctgcaac---caccaccactactccttccacacaaagtgcatct |
45650186 |
T |
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| Q |
211 |
tcagctactaccatctcaccaactgttgctttctttt |
247 |
Q |
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| T |
45650185 |
tcatctactagtatctcaccaattgttgctttatttt |
45650149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 45703423 - 45703550
Alignment:
| Q |
117 |
tgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagct |
216 |
Q |
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| T |
45703423 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
45703519 |
T |
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| Q |
217 |
actaccatctcaccaactgttgctttctttt |
247 |
Q |
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| T |
45703520 |
acttgtatctcaccaattgttgccttctttt |
45703550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 45887229 - 45887356
Alignment:
| Q |
117 |
tgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagct |
216 |
Q |
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| T |
45887229 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
45887325 |
T |
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| Q |
217 |
actaccatctcaccaactgttgctttctttt |
247 |
Q |
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| T |
45887326 |
acttgtatctcaccaattgttgccttctttt |
45887356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 45887123 - 45887213
Alignment:
| Q |
98 |
cttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttc---caatcgcacccctgccgcaacaaccaccaccac |
185 |
Q |
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| T |
45887123 |
cttcttctgctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45887213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 45703317 - 45703407
Alignment:
| Q |
98 |
cttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttc---caatcgcacccctgccgcaacaaccaccaccac |
185 |
Q |
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| T |
45703317 |
cttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45703407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 45703206 - 45703282
Alignment:
| Q |
20 |
aagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggcatgaaactctttgttaaggtt |
93 |
Q |
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| T |
45703206 |
aagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgttaaggtt |
45703282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 45887018 - 45887094
Alignment:
| Q |
20 |
aagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggcatgaaactctttgttaaggtt |
93 |
Q |
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| T |
45887018 |
aagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgttaaggtt |
45887094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 1193589 - 1193657
Alignment:
| Q |
173 |
caaccaccaccactactcctaccacacaaagtgcatcttcagctactaccatctcaccaactgttgctt |
241 |
Q |
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|||| ||||||||||||||||| || |||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
1193589 |
caactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgctt |
1193657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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