View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11154_high_3 (Length: 805)

Name: NF11154_high_3
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11154_high_3
NF11154_high_3
[»] chr1 (2 HSPs)
chr1 (48-340)||(18117983-18118275)
chr1 (200-492)||(18125779-18126077)
[»] chr7 (23 HSPs)
chr7 (202-646)||(36217163-36217613)
chr7 (200-647)||(36221147-36221600)
chr7 (226-648)||(36225993-36226421)
chr7 (202-356)||(35939415-35939569)
chr7 (232-645)||(35982126-35982539)
chr7 (232-645)||(36003538-36003951)
chr7 (238-360)||(35946904-35947026)
chr7 (238-360)||(35958109-35958231)
chr7 (238-360)||(35977564-35977686)
chr7 (238-360)||(35998976-35999098)
chr7 (399-504)||(35973591-35973696)
chr7 (399-504)||(35995003-35995108)
chr7 (48-151)||(36221643-36221746)
chr7 (48-153)||(32727499-32727604)
chr7 (48-149)||(35939258-35939359)
chr7 (569-646)||(35977895-35977972)
chr7 (569-646)||(35999307-35999384)
chr7 (259-379)||(35955179-35955299)
chr7 (290-356)||(35965669-35965735)
chr7 (289-373)||(29602916-29603000)
chr7 (289-373)||(29750294-29750378)
chr7 (48-147)||(35957916-35958015)
chr7 (694-749)||(36217063-36217115)
[»] chr8 (1 HSPs)
chr8 (56-116)||(35406501-35406561)
[»] chr2 (1 HSPs)
chr2 (51-153)||(26328683-26328785)
[»] chr4 (1 HSPs)
chr4 (237-362)||(49340543-49340668)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 48 - 340
Target Start/End: Original strand, 18117983 - 18118275
Alignment:
Q  48 attccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttct 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18117983 attccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttct 18118082  T
Q  148 tggtgaacaacgattgaagctgaagctgaatcaaaagttgaagcagcagaatcagagttcattattttgataattatatgcctaatataaaaatcattgg 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||| |||||    
T  18118083 tggtgaacaacgattgaagctgaagctgaatcaaaatttgaagcagcagaatcaaagttgattattttgataattatgtgcataatataaaaataattgg 18118182  T
Q  248 agacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctccaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18118183 agacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttccccaatcctccaa 18118275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 200 - 492
Target Start/End: Original strand, 18125779 - 18126077
Alignment:
Q  200 cagagttcattattttgataattatatgcctaatataaaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgtt 299  Q
    ||||||| || ||||| || ||||| ||||| || | ||||| ||  |||||||| || ||||||||||||||||| | |||||| || |||||||| ||    
T  18125779 cagagttgatgattttaatgattatttgcctgatgtcaaaattatcagagacacacacccacatcttcaattgaaagagttcatctattctcttatcatt 18125878  T
Q  300 gaataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaatgacagacagaattttatcgccatta-catc-----gaggattg 393  Q
    ||| || | |||||| | ||||||||||| ||| || |||||||| || |||||||| ||||| ||| ||||||| |||| | ||||     ||||||      
T  18125879 gaaaacaagctttgccaatgtggtcttccccaagccaccaattcccaccatgggaataacagatagacttttatcaccatcaccatcaccatgaggatgt 18125978  T
Q  394 gattccatcaaaagcttgataactgcttccttgtcattctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcaca 492  Q
    | || |||||||||||||||||   ||||| | ||| |||| ||||| ||||||||  ||||||||||||  | |||| ||| ||| ||||| ||||||    
T  18125979 gcttgcatcaaaagcttgataatctcttccctatcactctctcttcctattacactcaaagcatcaacatcaggataagtcatttccctcttttgcaca 18126077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 202 - 646
Target Start/End: Complemental strand, 36217613 - 36217163
Alignment:
Q  202 gagttcattattttgataattatatgcctaatataaaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttga 301  Q
    ||||| || ||||||||||  || || || |||| |||||||   ||||||||  | ||||||||||||||||||| |||||| ||||||||||| |||     
T  36217613 gagttgataattttgataacgatctgtcttatatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgt 36217514  T
Q  302 ataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaatgacagacagaattttatcgccatt------acatcgaggattgga 395  Q
    | ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| | | | || |||  |||||      || | |||||| |||    
T  36217513 acaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggatcgga 36217414  T
Q  396 ttccatcaaaagcttgataactgcttccttgtcattctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcacagca 495  Q
     ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||||| |||||| |||||||||  | | |||||| |||||||||| |    
T  36217413 atccatcaaaagctcgataattgcttccttgtcattctcccttcctataacacttgaaacatcaatatgggaataggtgatttctctattgtgcacagaa 36217314  T
Q  496 agtccaggatcaacatccgttctcacaagtccaaacccagttccatctgcaactaccttattcaatctgcccttaatatctttaacttgatgtgccattc 595  Q
    ||||| || |||||||   |||||||||||||||||   || ||||| ||  | || |||| ||||||  |  |||| ||||| | |||| ||| ||| |    
T  36217313 agtccgggctcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcc 36217214  T
Q  596 taaatcggaaaacaagtgggttagacgaagaaaagtaatggcgtaccttca 646  Q
    |||| |||||| |||| || ||||| ||||||||| | |||| ||||||||    
T  36217213 taaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttca 36217163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 200 - 647
Target Start/End: Complemental strand, 36221600 - 36221147
Alignment:
Q  200 cagagttcattattttgataattatatgcctaatataaaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgtt 299  Q
    ||||||| || ||||||||||| ||  ||||||||| |||||||||||||||||| || || ||||||||||| ||||  ||||| ||||||||||| ||    
T  36221600 cagagttgataattttgataataatgcgcctaatatcaaaatcattggagacacacacccaaatcttcaattggaaaatatcatctatcctcttatcatt 36221501  T
Q  300 gaataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaatgacagacagaattttatcgccat-tacatc-----gaggattg 393  Q
    ||| |||||| |||||||||||||||||| ||| || |||||||||||||||||||| ||| ||| | |||| || |||| | ||||     ||||||      
T  36221500 gaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacacaaatttttgtcaccatctccatctccatgaggatgc 36221401  T
Q  394 gattccatcaaaagcttgataactgcttccttgtcattctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcacag 493  Q
    | || ||||||||| ||||||| | ||||| ||||||||||||| ||||| ||||||||||||||||| |  |||| | | ||||||||| | ||||||     
T  36221400 ggttgcatcaaaagtttgataatttcttccctgtcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaa 36221301  T
Q  494 caagtccaggatcaacatccgttctcacaagtccaaacccagttccatctgcaactaccttattcaatctgcccttaatatctttaacttgatgtgccat 593  Q
    || |  ||||  |||||||  ||||||||||||||||||  || || || ||  | ||||||||||||||  |  |||| ||||| | || ||||| |||    
T  36221300 caggatcaggtgcaacatcgattctcacaagtccaaaccttgtcccgtcagctgccaccttattcaatctatctctaatctctttgattttatgtgacat 36221201  T
Q  594 tctaaatcggaaaacaagtgggttagacgaagaaaagtaatggcgtaccttcat 647  Q
     ||||| |||||| | ||||| || || ||||||||  | |||| |||||||||    
T  36221200 cctaaaacggaaagctagtggatttgaggaagaaaacaagtggcataccttcat 36221147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 226 - 648
Target Start/End: Original strand, 36225993 - 36226421
Alignment:
Q  226 tgcctaatataaaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtct 325  Q
    |||||||||| ||||||||  |||| ||| || |||||||||||||| ||||  ||||| | ||||||||||||||| ||||| ||||||||||||||||    
T  36225993 tgcctaatatcaaaatcatcagagatacacacccacatcttcaattggaaaagatcatcaaccctcttatcgttgaacaccaattttgcaagtgtggtct 36226092  T
Q  326 tcctcaatcctccaattccaactatgggaatgacagacagaattttatcgccatta-catc-----gaggattggattccatcaaaagcttgataactgc 419  Q
    ||| ||| || |||||||| ||||||||||| ||| ||| | ||||||| |||| | ||||     ||||||  |  | |||||||||||||||||   |    
T  36226093 tccccaagccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatc 36226192  T
Q  420 ttccttgtcattctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcacagcaagtccaggatcaacatccgttctc 519  Q
     | | | |||||||||||||| || |||  |||||||||||| ||||||| | ||| ||||||||| ||||||||||||||   |||||||    ||       
T  36226193 attcctctcattctcccttcctatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgct 36226292  T
Q  520 acaagtccaaacccagttccatctgcaactaccttattcaatctgcccttaatatctttaacttgatgtgccattctaaatcggaaaacaagtgggttag 619  Q
     |||||||||||| ||| ||||| ||  | ||||||||||||||  || |||| ||||| | | ||  ||||||  |||| |||||| |||||||  |||    
T  36226293 gcaagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactag 36226392  T
Q  620 acgaagaaaagtaatggcgtaccttcatc 648  Q
    | ||||||||  | |||||||||||||||    
T  36226393 aggaagaaaaaaattggcgtaccttcatc 36226421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 202 - 356
Target Start/End: Original strand, 35939415 - 35939569
Alignment:
Q  202 gagttcattattttgataattatatgcctaatataaaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttga 301  Q
    ||||| |||||||| |||||||| ||||| |||| ||| |||||||||||||| |  |||||||||||||| |||| || ||  | ||||||||| ||||    
T  35939415 gagttgattattttaataattatctgcctgatatcaaactcattggagacacacaaccacatcttcaattggaaaagttgattcaccctcttatcattga 35939514  T
Q  302 ataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaat 356  Q
    | |||||||||||||||||||||||||  |||||||||||||| || ||||||||    
T  35939515 acaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaat 35939569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 232 - 645
Target Start/End: Original strand, 35982126 - 35982539
Alignment:
Q  232 atataaaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctca 331  Q
    |||| ||||||||  ||||| || || |||||| |||| | |||| |||  || ||||||| ||| ||||| ||||| ||||||||||| ||||| | ||    
T  35982126 atatcaaaatcatcagagacgcacacccacatcctcaacttaaaagattggtccatcctctcatcattgaaaaccaattttgcaagtgtagtctttccca 35982225  T
Q  332 atcctccaattccaactatgggaatgacagacagaattttatcgccattacatcgaggattggattccatcaaaagcttgataactgcttccttgtcatt 431  Q
    | ||||||||||| || |||||||| ||| | |   ||||||| |||| || | ||||||  | |  ||||||||||||||||| | | ||| | || ||    
T  35982226 aacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatcaaaagcttgataatttcatccctatcctt 35982325  T
Q  432 ctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcacagcaagtccaggatcaacatccgttctcacaagtccaaac 531  Q
    ||| ||||| || |||    |||||||||||||||||| | |||||||||| || ||||||  | ||||||||||||||||  |||||| ||||||||||    
T  35982326 ctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctcttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaac 35982425  T
Q  532 ccagttccatctgcaactaccttattcaatctgcccttaatatctttaacttgatgtgccattctaaatcggaaaacaagtgggttagacgaagaaaagt 631  Q
      ||| ||||| ||  | |||||||  |||||   | |||| ||||| | | |||||||||| ||||  || ||| ||||||| ||||| |||||||||     
T  35982426 ttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaaga 35982525  T
Q  632 aatggcgtaccttc 645  Q
    | ||||||||||||    
T  35982526 agtggcgtaccttc 35982539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 232 - 645
Target Start/End: Original strand, 36003538 - 36003951
Alignment:
Q  232 atataaaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctca 331  Q
    |||| ||||||||  ||||| || || |||||| |||| | |||| |||  || ||||||| ||| ||||| ||||| ||||||||||| ||||| | ||    
T  36003538 atatcaaaatcatcagagacgcacacccacatcctcaacttaaaagattggtccatcctctcatcattgaaaaccaattttgcaagtgtagtctttccca 36003637  T
Q  332 atcctccaattccaactatgggaatgacagacagaattttatcgccattacatcgaggattggattccatcaaaagcttgataactgcttccttgtcatt 431  Q
    | ||||||||||| || |||||||| ||| | |   ||||||| |||| || | ||||||  | |  ||||||||||||||||| | | ||| | || ||    
T  36003638 aacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatcaaaagcttgataatttcatccctatcctt 36003737  T
Q  432 ctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcacagcaagtccaggatcaacatccgttctcacaagtccaaac 531  Q
    ||| ||||| || |||    |||||||||||||||||| | |||||||||| || ||||||  | ||||||||||||||||  |||||| ||||||||||    
T  36003738 ctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctcttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaac 36003837  T
Q  532 ccagttccatctgcaactaccttattcaatctgcccttaatatctttaacttgatgtgccattctaaatcggaaaacaagtgggttagacgaagaaaagt 631  Q
      ||| ||||| ||  | |||||||  |||||   | |||| ||||| | | |||||||||| ||||  || ||| ||||||| ||||| |||||||||     
T  36003838 ttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaaga 36003937  T
Q  632 aatggcgtaccttc 645  Q
    | ||||||||||||    
T  36003938 agtggcgtaccttc 36003951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 35946904 - 35947026
Alignment:
Q  238 aaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctc 337  Q
    ||||||| ||||| ||| || ||||||||||| || |||| || ||  ||||||||||| ||||| ||| |||| |||||||||||||||| ||| ||||    
T  35946904 aaatcatcggagatacacacccacatcttcaactggaaaagttgatgtatcctcttatcattgaacaccgacttcgcaagtgtggtcttccacaaacctc 35947003  T
Q  338 caattccaactatgggaatgaca 360  Q
    ||||||| ||||| |||||||||    
T  35947004 caattcccactattggaatgaca 35947026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 35958109 - 35958231
Alignment:
Q  238 aaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctc 337  Q
    ||||||| ||||| ||| || ||||||||||| || |||| || ||| ||||||||||| ||||| ||| ||||||||||||| ||||| | ||| ||||    
T  35958109 aaatcatcggagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaagtgttgtctttcccaaacctc 35958208  T
Q  338 caattccaactatgggaatgaca 360  Q
    ||||||| ||||| |||||||||    
T  35958209 caattcccactattggaatgaca 35958231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 35977564 - 35977686
Alignment:
Q  238 aaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctc 337  Q
    |||||||  |||| ||| || ||||||||||| || |||| || ||| ||||||||||| ||||| ||| |||||||||  |||||||||| ||| ||||    
T  35977564 aaatcatcagagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctc 35977663  T
Q  338 caattccaactatgggaatgaca 360  Q
    ||||||| ||||| |||||||||    
T  35977664 caattcccactattggaatgaca 35977686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 35998976 - 35999098
Alignment:
Q  238 aaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctc 337  Q
    |||||||  |||| ||| || ||||||||||| || |||| || ||| ||||||||||| ||||| ||| |||||||||  |||||||||| ||| ||||    
T  35998976 aaatcatcagagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctc 35999075  T
Q  338 caattccaactatgggaatgaca 360  Q
    ||||||| ||||| |||||||||    
T  35999076 caattcccactattggaatgaca 35999098  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 35973591 - 35973696
Alignment:
Q  399 catcaaaagcttgataactgcttccttgtcattctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcacagcaagt 498  Q
    ||||| ||||||||||| | ||||| | ||||||||||| ||||| |||||||||||||| |||||||||| | ||||||||||| | |||| | |||||    
T  35973591 catcagaagcttgataatttcttccctatcattctccctcccaataacacttgaagcatcgacatgggaattagtcaattctctcctatgcaaaacaagt 35973690  T
Q  499 ccagga 504  Q
     |||||    
T  35973691 tcagga 35973696  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 35995003 - 35995108
Alignment:
Q  399 catcaaaagcttgataactgcttccttgtcattctcccttccaattacacttgaagcatcaacatgggaataactcaattctctcttgtgcacagcaagt 498  Q
    ||||| ||||||||||| | ||||| | ||||||||||| ||||| |||||||||||||| |||||||||| | ||||||||||| | |||| | |||||    
T  35995003 catcagaagcttgataatttcttccctatcattctccctcccaataacacttgaagcatcgacatgggaattagtcaattctctcctatgcaaaacaagt 35995102  T
Q  499 ccagga 504  Q
     |||||    
T  35995103 tcagga 35995108  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 36221746 - 36221643
Alignment:
Q  48 attccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttct 147  Q
    |||||||||||||||||  |  || | |||| ||| |||| |||||||| |||| |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  36221746 attccatatatcatctaggatgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttct 36221647  T
Q  148 tggt 151  Q
    ||||    
T  36221646 tggt 36221643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 32727499 - 32727604
Alignment:
Q  48 attccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttct 147  Q
    |||||||||||| ||||  ||||| |||||| | | ||||  ||||||| ||||   ||||||||||||||||||||||||||| | ||| |||||||||    
T  32727499 attccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaagttgttgatgttttct 32727598  T
Q  148 tggtga 153  Q
    ||||||    
T  32727599 tggtga 32727604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 35939258 - 35939359
Alignment:
Q  48 attccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttct 147  Q
    ||||||||| ||||||||||| ||||||||| ||| |||| ||||||||  ||||| |||||||   |||||| ||||||| || | ||| |||||||||    
T  35939258 attccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgacttacaagctgcacaatatctaagttgttaatgttttct 35939357  T
Q  148 tg 149  Q
    ||    
T  35939358 tg 35939359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 35977895 - 35977972
Alignment:
Q  569 taatatctttaacttgatgtgccattctaaatcggaaaacaagtgggttagacgaagaaaagtaatggcgtaccttca 646  Q
    |||| ||||| | |||| ||||||| ||||| |||||||||||||| ||||| ||||||||| | |||||||||||||    
T  35977895 taatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgtaccttca 35977972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 569 - 646
Target Start/End: Original strand, 35999307 - 35999384
Alignment:
Q  569 taatatctttaacttgatgtgccattctaaatcggaaaacaagtgggttagacgaagaaaagtaatggcgtaccttca 646  Q
    |||| ||||| | |||| ||||||| ||||| |||||||||||||| ||||| ||||||||| | |||||||||||||    
T  35999307 taatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgtaccttca 35999384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 379
Target Start/End: Original strand, 35955179 - 35955299
Alignment:
Q  259 cacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaatga 358  Q
    |||||||||||||  |||| || ||| | ||| | ||| ||||| || |||||||||||||||||||| | |||||||||||| || | ||||||||| |    
T  35955179 cacatcttcaatttgaaaatttgatccaccctttcatcattgaacactaactttgcaagtgtggtctttcccaatcctccaatacctattatgggaataa 35955278  T
Q  359 cagacagaattttatcgccat 379  Q
    || ||| | ||||||| ||||    
T  35955279 cacacaaacttttatctccat 35955299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 35965669 - 35965735
Alignment:
Q  290 tcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaat 356  Q
    ||||||| ||||| ||||| ||||||||||||||||||| ||| || |||||||| | |||||||||    
T  35965669 tcttatcattgaacaccaagtttgcaagtgtggtcttccccaagccaccaattcctagtatgggaat 35965735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 29602916 - 29603000
Alignment:
Q  289 ctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaatgacagacagaattttat 373  Q
    |||||||| ||||| |||  |||||||||||| ||||| | ||| |||||||||||||| || ||||| ||||| ||| ||||||    
T  29602916 ctcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttat 29603000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 29750378 - 29750294
Alignment:
Q  289 ctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcctccaattccaactatgggaatgacagacagaattttat 373  Q
    |||||||| ||||| |||  |||||||||||| ||||| | ||| |||||||||||||| || ||||| ||||| ||| ||||||    
T  29750378 ctcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttat 29750294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 35957916 - 35958015
Alignment:
Q  48 attccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttct 147  Q
    ||||||||  ||||||||||||| ||||||| ||| |||| |||||||  || | |||||||||  ||||||| ||||||| || | ||| |||||||||    
T  35957916 attccatacgtcatctaacacaactaaaaacttttgaccagaaagtttttgtttgagacgacttactagctgcacaatatctaagttgttgatgttttct 35958015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 749
Target Start/End: Complemental strand, 36217115 - 36217063
Alignment:
Q  694 aactcaaatccatccaacaatatatcttcagcatcagaacagatgttttgaatctg 749  Q
    |||||||||||||||||   || ||||||||||||| | |||||||||||||||||    
T  36217115 aactcaaatccatccaa---tacatcttcagcatcatagcagatgttttgaatctg 36217063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 35406561 - 35406501
Alignment:
Q  56 tatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtag 116  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  35406561 tatcatctaacactagtaaaaactttttaccatatagtttacgtctcagacgactttgtag 35406501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 26328785 - 26328683
Alignment:
Q  51 ccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttcttgg 150  Q
    ||||||||||||||| || |||| |||| |||||||  |||| ||| |||| ||||||||   ||  |||||||||||||| || |  ||||||||||||    
T  26328785 ccatatatcatctaagacgagtacaaactttttacctgaaagcttatgtctaagacgactcactaattgctcaatatcaaagtgttcaatgttttcttgg 26328686  T
Q  151 tga 153  Q
    |||    
T  26328685 tga 26328683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 49340668 - 49340543
Alignment:
Q  237 aaaatcattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttcctcaatcct 336  Q
    ||||||||  |||||||| || |||||||||||| |||||   ||||| |  |||||||| || || || | |||||||||||| || || |  ||||||    
T  49340668 aaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatcct 49340569  T
Q  337 ccaattccaactatgggaatgacaga 362  Q
    ||||||||||| || ||||| |||||    
T  49340568 ccaattccaacaataggaataacaga 49340543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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