View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_1 (Length: 920)
Name: NF11154_low_1
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 618; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Complemental strand, 42326006 - 42325363
Alignment:
| Q |
1 |
tgtaggggagagaca--gagagtaaaaggggtttgtttgatttgtcatctaatgtaacatgactaacatgaaacattcctgagggactagctagttgaaa |
98 |
Q |
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| T |
42326006 |
tgtaggggagagacaaagagagtaaaaggggtttgtttgatttgtcatctaatgtaacatgactaacatgaaacattcctgagggactagctagttgaaa |
42325907 |
T |
|
| Q |
99 |
tgaacagaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325906 |
tgaacagaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattata |
42325807 |
T |
|
| Q |
199 |
tcttgcatgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttttcct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42325806 |
tcttgcatgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttt-cct |
42325708 |
T |
|
| Q |
299 |
caacaagaagagttatctgagttgtactcttaagtttccactcaactttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaacca |
398 |
Q |
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| T |
42325707 |
caacaagaagaattatctgagttgtactcttaagtttccactcaaatttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaacca |
42325608 |
T |
|
| Q |
399 |
ctcattgttggaagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatg |
498 |
Q |
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| T |
42325607 |
ctcattgttggaagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatg |
42325508 |
T |
|
| Q |
499 |
agtttttcccttccactatcaacaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatattttttgttgtt |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325507 |
agtttttcccttccactatcaacaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatattttttgttgtt |
42325408 |
T |
|
| Q |
599 |
ttctattatcagacatactcacacaaacacgctatgtgtctgtcc |
643 |
Q |
| |
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| T |
42325407 |
ttctattatcagacatactcacacaaacacgctatgtgtctgtcc |
42325363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 665 - 903
Target Start/End: Complemental strand, 42325322 - 42325081
Alignment:
| Q |
665 |
tatttatatgcagggttcagagttcaat---cttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
761 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325322 |
tatttatatgcagggttcagagttcaatattcttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
42325223 |
T |
|
| Q |
762 |
tctctcacaacatcaaacatccctctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
861 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325222 |
tctctcacaacatcaaacatccatctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
42325123 |
T |
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| Q |
862 |
tatacatatttggttggtgtaggtgatgacagaccctgatgt |
903 |
Q |
| |
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| T |
42325122 |
tatacatatttggttggtgtaggtgatgacagaccctgatgt |
42325081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 559
Target Start/End: Complemental strand, 36278975 - 36278866
Alignment:
| Q |
450 |
atgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttcccttccactatcaacaccaaacccaaagttgagattgatggtg |
549 |
Q |
| |
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||||||||| |||| | |||||||| |||||||| | |||||| ||||||||||| |||||| | | | ||| ||||| |||||| ||||| |||||| |
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| T |
36278975 |
atgaaaatgtctgtcacttacaacactaagcaagtttacaatggtcatgagttttttccttcctcagttaccactaaacctaaagttcagattcatggtg |
36278876 |
T |
|
| Q |
550 |
gtgacatgag |
559 |
Q |
| |
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|||| ||||| |
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| T |
36278875 |
gtgatatgag |
36278866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 493
Target Start/End: Complemental strand, 26206592 - 26206495
Alignment:
| Q |
396 |
ccactcattgttggaagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatgg |
493 |
Q |
| |
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||||| ||| |||| |||||||||||||| ||| |||| | |||||| ||| || ||||||||||||| ||||||||| || || |||||||||| |
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| T |
26206592 |
ccactaattcttgggagagtgataggagatgttattgactattttaccccaaccacaaaaatgactgtgacttacaacaacaaagaaatcttcaatgg |
26206495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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