View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_10 (Length: 405)
Name: NF11154_low_10
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 10284196 - 10283819
Alignment:
| Q |
20 |
gtgaatgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaa |
119 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284196 |
gtgaatgctttcagaacatttgaacaaatttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaa |
10284097 |
T |
|
| Q |
120 |
ctgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10284096 |
ctgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaactggtatggattgataccagagct |
10283997 |
T |
|
| Q |
220 |
ttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10283996 |
ttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcaggagaagttcctttgttaact |
10283897 |
T |
|
| Q |
320 |
tctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcctgagtttgctgcctatgct |
397 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
10283896 |
tctgattatggtgcttctgaaggttggattggttcaaatttgaatcctaaagtggctcctgagtttgctacttatgct |
10283819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 388
Target Start/End: Complemental strand, 10243368 - 10243004
Alignment:
| Q |
24 |
atgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgc |
123 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10243368 |
atgctttcagaacctttgaacaagtttgggaagaacttattactgacatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgc |
10243269 |
T |
|
| Q |
124 |
tatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagcttttt |
223 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |
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| T |
10243268 |
aatgtcaaaactgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattggtatggactgataccagagcttttt |
10243169 |
T |
|
| Q |
224 |
ccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctg |
323 |
Q |
| |
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|| |||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||||||||| ||||||| |
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| T |
10243168 |
cctaatgttaagtatgttcaagggatcatgactggtgcaatggaaccttatgtgaaaaagttgagacactatgcaggagaggttcctttgttgacttctg |
10243069 |
T |
|
| Q |
324 |
attatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
388 |
Q |
| |
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| ||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
10243068 |
agtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10243004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 10272954 - 10272586
Alignment:
| Q |
20 |
gtgaatgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10272954 |
gtgaatgctttcagaacatttgaacaagtttgggaggaacttgttactgatatcagagaaggtgttcttagcagtagaatcacacatccattcattagaa |
10272855 |
T |
|
| Q |
120 |
ctgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagct |
219 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |
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|
| T |
10272854 |
ctgctatgtctaaactgctgacaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattggtatggattgataccggagct |
10272755 |
T |
|
| Q |
220 |
ttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaact |
319 |
Q |
| |
|
||| || |||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| ||||||| ||||||| ||| ||||||||| | ||| |
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|
| T |
10272754 |
tttccctaatgctaagtatcttctagggatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgcaggagaggttcctttggtgact |
10272655 |
T |
|
| Q |
320 |
tctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
388 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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|
| T |
10272654 |
tctgagtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10272586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 24 - 388
Target Start/End: Complemental strand, 10265253 - 10264889
Alignment:
| Q |
24 |
atgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |
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|
| T |
10265253 |
atgctttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaatagggtaacacatccatccattagaactgc |
10265154 |
T |
|
| Q |
124 |
tatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagcttttt |
223 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||| |
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| T |
10265153 |
tatgtctaaactgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcgattggtatggattgataccagaacttttt |
10265054 |
T |
|
| Q |
224 |
ccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctg |
323 |
Q |
| |
|
|| |||| ||||||||||||||| |||||||||||| ||||||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||| ||||||| |
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| T |
10265053 |
cctaatgttaagtatgttctaggaatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgcaggagaggttcctttgttgacttctg |
10264954 |
T |
|
| Q |
324 |
attatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
388 |
Q |
| |
|
| |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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|
| T |
10264953 |
aatatggtgcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10264889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 13979996 - 13979838
Alignment:
| Q |
77 |
gaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaaga |
176 |
Q |
| |
|
||||| |||||||| |||||| ||||| ||||||| ||| ||| ||||||| |||||||| ||||||||||| ||| ||||| || | |||||||| | |
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| T |
13979996 |
gaaggagttcttagtagtagagtcacagatccatcgattcgaat--ctatgtctaaattgctcaaaccaaatccagaattagctgacataatccacaaaa |
13979899 |
T |
|
| Q |
177 |
aatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagta |
237 |
Q |
| |
|
|||| ||| || | ||||||||||| ||| |||||||| | ||||| ||||| ||||| |
|
|
| T |
13979898 |
aatgtctagggttgaataattggtatggtttgttaccagagttgtttcctaatgcgaagta |
13979838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 48367560 - 48367773
Alignment:
| Q |
24 |
atgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgc |
123 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||| ||| || |||||| | ||||||||||||||| || ||| |||| ||| |||||| ||||||| |
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|
| T |
48367560 |
atgccttcagatcctttgaacaagtttgggaagagctttgtaatgatataagagaaggtgttcttagtagcagagtcacggttccctccattcgaactgc |
48367659 |
T |
|
| Q |
124 |
tatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagcttttt |
223 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||| |||| ||| | |||||||| | ||| |||||||||||| |||||||| |||||||| ||||||||| |
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| T |
48367660 |
tatgtctaaattgctcaaaccaaatccagaattagcgaacataatccacaaaagatgtataggattaagcaactggtatggtttgataccggagcttttt |
48367759 |
T |
|
| Q |
224 |
ccaaatgctaagta |
237 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
48367760 |
ccgaatgcaaagta |
48367773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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