View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_13 (Length: 349)
Name: NF11154_low_13
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 40397266 - 40397600
Alignment:
| Q |
1 |
atagggttggtgtgatttgatattgtatgtatatgtacaacgtaataggtccaatcaaacataaaactttagcaaaatattcaaattcctcccttgcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
40397266 |
atagggttggtgtgatttgatattgtatgtatatgtacaacgtaataggcccaatcaaccataaaactttagcaaaaaattcaaattcctcccttgcttc |
40397365 |
T |
|
| Q |
101 |
cacttctgttgatagattttcttgcaaagttgtttgtcatcttagtacca--aatcacctttctgtctttcagctctcaaattcatattcatttttctac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40397366 |
cacttctgttgatagattttcttgcaaagttgtttgtcctcttagtaccaacaatcacctttctgtctttcagctctcaaattcatattcatttttctac |
40397465 |
T |
|
| Q |
199 |
tattannnnnnnnnncttttccaaaccaaacatattcaactttcaagtcatatctagggctttatttttcgtattccaacatgtatattggatttatttg |
298 |
Q |
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| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40397466 |
tttaattttttttt--ttttccaaaccaaacatattcaactttcaagtcatatctagggctttatttttcgtattccaacatgtatattggatttatttg |
40397563 |
T |
|
| Q |
299 |
tcatatgcatttggcgtcttccgtatacacaggttct |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40397564 |
tcatatgcatttggcgtcttccgtatacacaggttct |
40397600 |
T |
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