View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11154_low_14 (Length: 335)
Name: NF11154_low_14
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 50339048 - 50338728
Alignment:
| Q |
15 |
ggacatcaaatactggaggttttcctgtatcaaagaagattttctagttagttactgcatcagtcagttagatgtgaaataagatattccattatagaag |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50339048 |
ggacttcaaatactggaggttttcctgtatcaaagaagattttctagttagttactgcatcagtcagttagatgtgaaataagatattccattatagaag |
50338949 |
T |
|
| Q |
115 |
atgaggaatacctgccaaaagagcatccacagttgcatctaacctatgatgaacacgacattcagttttggatatcatctcaacagcacacgtaaatgta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50338948 |
atgaggaatacctgccaaaagagcatccacagttgcatctaacctatgatgaacacgacattcagttttggatatcatctcaacagcacatgtaaatgta |
50338849 |
T |
|
| Q |
215 |
ggtggtcctttcctttctagaattgtcttttgcactttccttttcctggcttcctcatccccgagagttacactctattcaaataaatgaccaatgaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50338848 |
ggtggtcctttcctttctagaattgtcttttgcactttccttttcctggcttcctcatccccgagagttacactctattcaaataaatgaccaatgaaca |
50338749 |
T |
|
| Q |
315 |
tcattaacgtggacacgcgct |
335 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
50338748 |
tcattaacgtggacacgcgct |
50338728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University