View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11154_low_16 (Length: 287)
Name: NF11154_low_16
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_16 |
 | |
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| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 57174 - 57451
Alignment:
| Q |
1 |
acaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
57174 |
acaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaatgaattgctcataaccgtgccaatatgtattt |
57273 |
T |
|
| Q |
101 |
ttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgc |
200 |
Q |
| |
|
| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
57274 |
taatacccgaccaaaccgaggatttaaaataacgcatggagggctgaccgtttgagaaaaatcgcctcttgaataaattagaccactgtgtttcctgtgc |
57373 |
T |
|
| Q |
201 |
aattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
278 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
57374 |
aattaaatcccaagataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
57451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 21879319 - 21879596
Alignment:
| Q |
1 |
acaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtattt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || |
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|
| T |
21879319 |
acaagaggaacacctagccaattatcagtccaaaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagtt |
21879418 |
T |
|
| Q |
101 |
ttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgc |
200 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |
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|
| T |
21879419 |
taatacccgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcttcttttgaataaattagaccactgtgtttcccgtgc |
21879518 |
T |
|
| Q |
201 |
aattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
278 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21879519 |
aattaaatcccaagataatttcagaattaaagcctcgttaatcaagcacgtatgtttgatgtctaacccaccttcatc |
21879596 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 1926126 - 1926403
Alignment:
| Q |
1 |
acaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtattt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || |
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|
| T |
1926126 |
acaagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagtt |
1926225 |
T |
|
| Q |
101 |
ttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgc |
200 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| | |||| |
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|
| T |
1926226 |
taatacccgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgaaaaatatcgcctcttgaataaatgagaccactatgtttgccgtgc |
1926325 |
T |
|
| Q |
201 |
aattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
278 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1926326 |
aattaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtagttttgatgtctaacccaccttcatc |
1926403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 21811769 - 21811492
Alignment:
| Q |
1 |
acaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtattt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || |
|
|
| T |
21811769 |
acaagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagtt |
21811670 |
T |
|
| Q |
101 |
ttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgc |
200 |
Q |
| |
|
| ||| | |||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||| ||||| | || |||||||||||||||| |||| |
|
|
| T |
21811669 |
taatacccgaccaaacggatgatttaaaatagtgcatggagggctgaccgtttgagaaatatctccttttgaaaagatgagaccactgtgtttcccgtgc |
21811570 |
T |
|
| Q |
201 |
aattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
278 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21811569 |
aattaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtaggcatgaggtctaacccaccttcatc |
21811492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 29304501 - 29304668
Alignment:
| Q |
109 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
208 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| | ||||||||| ||| |||| |||||||| ||||| || || || | |||||||| || |
|
|
| T |
29304501 |
gaccaaaccgaggatttaaaacagcgcttgctaggctgaccatgtgagaaataacgcatcttaaataaattcgaccattgagtatcttttgcaattaaat |
29304600 |
T |
|
| Q |
209 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
276 |
Q |
| |
|
||||| | ||||| ||||| ||||||||||||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
29304601 |
cccaagaaaatttaagaatcaaagcctcgttaatcaaacgcgtaggcttgatatcaaacccaccttca |
29304668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 282
Target Start/End: Original strand, 41345427 - 41345599
Alignment:
| Q |
109 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
208 |
Q |
| |
|
|||||||| |||||||||||||||||| || || ||||| | ||||||||| ||| |||| |||||||| ||||| || || || | |||||||| || |
|
|
| T |
41345427 |
gaccaaactgaggatttaaaatagcgcttgctagg-tgaccatgtgagaaataacgcatcttaaataaattcgaccattgagtatcttttgcaattaaat |
41345525 |
T |
|
| Q |
209 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatctcac |
282 |
Q |
| |
|
||||| | ||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||||||||| ||||| |
|
|
| T |
41345526 |
cccaagacaatttaagaatcaaagcttcgttaatcaaccgcgtaggcttgatatcaaacccaccttcagctcac |
41345599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 21040 - 21317
Alignment:
| Q |
1 |
acaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtattt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || |
|
|
| T |
21040 |
acaagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagtt |
21139 |
T |
|
| Q |
101 |
ttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgc |
200 |
Q |
| |
|
| ||| | |||||||| || |||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| |||| |||||||| ||||| | |||| |
|
|
| T |
21140 |
taatacccgaccaaacagaagatttaaaatagagcatggagggctgaccgtttgaaaaatatcacctattgaaaaaatgagaccactatgtttaccgtgc |
21239 |
T |
|
| Q |
201 |
aattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
278 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21240 |
aattaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtagaaatgaagtctaacccaccttcatc |
21317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 14627 - 14350
Alignment:
| Q |
1 |
acaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtattt |
100 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||| ||| |||| |||||||||||||| || || |
|
|
| T |
14627 |
acaagaggatcatctaaccaattatcagtccagaaattaatattatttccatctccaacaatccacaaagaattgctcaaaaccgtgccaatatatactt |
14528 |
T |
|
| Q |
101 |
ttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgc |
200 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
14527 |
taatgcccgaccaaaccgaggatttaaaatagcgcatggagggccgaccatttgagaaataaagctgcttgaataaactagaccactgtgtttcctgtgc |
14428 |
T |
|
| Q |
201 |
aattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
278 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
14427 |
aattaaatcccaagataattttagaattaaagcctcattaatcaatcgcgtaggtctgatatctaacccaccttcatc |
14350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 10137368 - 10137201
Alignment:
| Q |
109 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
208 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||| ||||||| ||| ||| ||||||| |||||||| ||||| || | |||||||| || |
|
|
| T |
10137368 |
gaccaaaccgaggacttaaaatagcgctttcttggctgaccatttgagagataacgcaatctgaataagttagaccattgtgtatcttctgcaattaaat |
10137269 |
T |
|
| Q |
209 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
276 |
Q |
| |
|
||||||| ||||| | ||| ||||| || |||||||| | |||||||||||||| || |||||||| |
|
|
| T |
10137268 |
cccaaaacaatttaataatcaaagcttcattaatcaaacatgtaggtttgatgtccaaaacaccttca |
10137201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 275
Target Start/End: Complemental strand, 20424952 - 20424785
Alignment:
| Q |
108 |
tgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgt-gcaattat |
206 |
Q |
| |
|
||||||||| || |||||||| ||||||| | |||| ||| ||||||||||| |||||||| || | |||||||| || || || ||| |||| || |
|
|
| T |
20424952 |
tgaccaaacagacgatttaaagtagcgcaagctaggcttaccatttgagaaataacgcctctttaaaaggttagaccattgagtatc-tgtagcaagtaa |
20424854 |
T |
|
| Q |
207 |
atcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttc |
275 |
Q |
| |
|
||||||| | |||| ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
20424853 |
atcccaagaatatttaagaatcaaagcttcgttaatcaaacgcgtaggcttgatatccaacccaccttc |
20424785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 10609885 - 10610054
Alignment:
| Q |
107 |
ctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgt-gcaatta |
205 |
Q |
| |
|
||||||||||||| || |||||||| |||| | |||| ||| |||| |||||| |||||||| || | |||||||| || || | |||| ||||||| |
|
|
| T |
10609885 |
ctgaccaaaccgaagacttaaaataacgcaagctaggcttaccatttgggaaataacgcctctttaaaaggttagaccattgagtat-ctgtagcaatta |
10609983 |
T |
|
| Q |
206 |
tatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
276 |
Q |
| |
|
||||||| | ||||| | ||| ||||| ||||||| ||| |||||||| ||||| || | |||||||||| |
|
|
| T |
10609984 |
aatcccaagacaatttaataatcaaagcttcgttaaacaaacgcgtaggcttgatatccagcccaccttca |
10610054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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