View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_17 (Length: 276)
Name: NF11154_low_17
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_17 |
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| [»] scaffold0770 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 50566159 - 50565916
Alignment:
| Q |
23 |
gatgcaccctctttaaatgttttattatgggtttattttgagttcaaccttttaaat-tattcttagcctttcaagttcacaccgactaataactgctgc |
121 |
Q |
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| T |
50566159 |
gatgcaccctctttaa-tgttttattgtgggtttattttgagttcaaccttttaaatgtattcttagcctttcaagttcacacaaactaatgactaccgc |
50566061 |
T |
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| Q |
122 |
ataaattgattataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaaga |
221 |
Q |
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| T |
50566060 |
ataaattgattataaatatgtcttatgaacaactctttagtacat--gagtatatgaaatttcaatttgagagggtatgtaagagtattgtagaagaaga |
50565963 |
T |
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| Q |
222 |
atttttagaaacttatgtgatcttattgtgtcttttttcttcttctct |
269 |
Q |
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| T |
50565962 |
attcttaaaaaattatgttatcttattgtgcctttttt-ttcttctct |
50565916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 50513962 - 50513738
Alignment:
| Q |
23 |
gatgcaccctctttaaatgttttattatgggtttattttgagttcaaccttttaaatt-attcttagcctttcaagttcacaccgactaataactgctgc |
121 |
Q |
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| T |
50513962 |
gatgcaccctctttaa-tgttttattgtggatttattttgagttcaaccttttaaatttattcttagcctttcaagttcacacagactaa---------- |
50513874 |
T |
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| Q |
122 |
ataaattgattataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaaga |
221 |
Q |
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| T |
50513873 |
------------taaatatgtcttatgaacaactctttagtacatatgagtatatgaaatttcaatttgagagggtatgtaagagtattgttgaagaaga |
50513786 |
T |
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| Q |
222 |
atttttagaaacttatgtgatcttattgtgtcttttttcttcttctct |
269 |
Q |
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| T |
50513785 |
actcttaaaaacttatgtgatcttattgtgtcttttttcttcttctct |
50513738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 38924568 - 38924496
Alignment:
| Q |
197 |
tatgtaagagtattgtataagaagaatttttagaaacttatgtgatcttattgtgtcttttttcttcttctct |
269 |
Q |
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| T |
38924568 |
tatgtaagagtattgtataagaagaatttttaaaaacttatgtgatcttattgtgtcttttttcttcttctct |
38924496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 4518 - 4586
Alignment:
| Q |
147 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
219 |
Q |
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| T |
4518 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
4586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 102822 - 102890
Alignment:
| Q |
147 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
219 |
Q |
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| T |
102822 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
102890 |
T |
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