View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_2 (Length: 841)
Name: NF11154_low_2
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 17 - 606
Target Start/End: Original strand, 18109826 - 18110415
Alignment:
| Q |
17 |
aatttgaacaaggtactctcatccttaaaatgcaaaagaagccaatttcacaatcatcacaagtagctcctcaacaagaagtagaaaaaagtccttcaaa |
116 |
Q |
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| T |
18109826 |
aatttgaacaaggtactctcatccttaaaatgcaaaagaagccaatttcacaatcatcacaagtagctcctcaacaagaagtagaaaaaagtccttcaaa |
18109925 |
T |
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| Q |
117 |
taataaagatttagatgaagcaaaggttgaaaaagctcaagagaccaatattccatcaccacaatctactaatttggaagaatcaaccaaagacatgaaa |
216 |
Q |
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| T |
18109926 |
taataaagatttagatgaagcaaaggttgaaaaagctcaagagaccaatattccaccaccacaatctactaatttggaagaatcaactaaagacatgaaa |
18110025 |
T |
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| Q |
217 |
agtgattcacctcaaacttctcaaagcattgnnnnnnngacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagc |
316 |
Q |
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| T |
18110026 |
agtgattcacctcaaacttctcaaagcattgaaaaaaagacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagc |
18110125 |
T |
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| Q |
317 |
caaaaccaacatctaaagacacaaccaatgaccaaatagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagc |
416 |
Q |
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| T |
18110126 |
caaaaccaacatctaaagacacaaccaatgaccaaatagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagc |
18110225 |
T |
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| Q |
417 |
caaaacacaaatagatgaaaagcctcaaaatggtcaacaagtgttggagtcaaaaccaacatctatagagagaaccaaaacacaaacaaatgaaaaggct |
516 |
Q |
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| T |
18110226 |
caaaacacaaatagatgaaaagcctcaaaatggtcaacaagtgttggagtcaaaaccaacatctatagagagaaccaaagcacaaacaaatgaaaaggct |
18110325 |
T |
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| Q |
517 |
caaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
606 |
Q |
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| T |
18110326 |
caaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
18110415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 668 - 830
Target Start/End: Original strand, 18110477 - 18110639
Alignment:
| Q |
668 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
767 |
Q |
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| T |
18110477 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
18110576 |
T |
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| Q |
768 |
cagaattcctccaaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcatctca |
830 |
Q |
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| T |
18110577 |
cagaattcctcccaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcttctca |
18110639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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