View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_20 (Length: 249)
Name: NF11154_low_20
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 45642865 - 45642707
Alignment:
| Q |
5 |
tcatatattagtgtgatgagataattttatgagaggcggtgcttcgtttattttcctcttccgtgtcattatctattaatttaatttgaattcttgtatg |
104 |
Q |
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| T |
45642865 |
tcatatattagtgtgatgagataattttatgagaggcggtgcttcgtttattttcctcttccgtgtcattatctattaatttaatttaaattcttgtatg |
45642766 |
T |
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| Q |
105 |
atctattcagacttatggaggttgtagtattaatcatcaatctaggaaatcttgcaatg |
163 |
Q |
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| T |
45642765 |
atctattcagacttatggaggttgtagtattaatcatcaatctaggaaatcttgcaatg |
45642707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 45642686 - 45642650
Alignment:
| Q |
183 |
gtgcttaatatactgaatgatcattggttactgagtc |
219 |
Q |
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| T |
45642686 |
gtgcttaatatactgaatgatcattggttactgagtc |
45642650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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