View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_4 (Length: 672)
Name: NF11154_low_4
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Complemental strand, 6222868 - 6222214
Alignment:
| Q |
1 |
aaacggtacggttgagattgagaatcaatataaaagatatttttccgattaaaaaacacgctttcttcgccttatatatacacacacacgtgtttcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6222868 |
aaacggtacggttgagattgagaatcaatataaaagatatttttccaattaaaaaacacgctttcttcgccttatatatacacacac--gtgtttcaaat |
6222771 |
T |
|
| Q |
101 |
aattcctattctta---gccagtagccaccatcttaaatttccttgttaggtctttgaattgaatcatcaacataaatttttctcgtatataaaacttcc |
197 |
Q |
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| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
6222770 |
atttcctattcttattagccagtagccaccatcttaaatttccttgttaggtctttgaattgaattatcaacataaatttttctcgtatataaa-cttcc |
6222672 |
T |
|
| Q |
198 |
caaatannnnnnnccttattaaaacaagacgcgactctccaaggtttctctattttgttccttcctccaacaaaatagagtaacacaccaaaccaaacca |
297 |
Q |
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|||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222671 |
caaatatttttttccttattaacacaagacgcgactcttcaaggtttctctattttattccttcctccaacaaaatagagtaacacaccaaaccaaacca |
6222572 |
T |
|
| Q |
298 |
aaaatctcgtagtaacaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggcaccttcgccaccgtcaacttagccacacacccacagaat |
397 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222571 |
aaaatctcgtagtatcaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggcaccttcgccaccgtcaacttagccacacacccacagaat |
6222472 |
T |
|
| Q |
398 |
tccggtatctttccgtctctcaccgccgtcaaaacctctgatacttacggctcccattctctcataaacgagaaacaaatacttgaaagtttaggatcat |
497 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222471 |
tccggtatctttccgtctctcaccgcagtcaaaacctctgatacttacggctcccattttctcataaacgagaaacaaatacttgaaagtttaggatcat |
6222372 |
T |
|
| Q |
498 |
ccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataatatttttctagaatatgctgctggcggtactctctc |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222371 |
ccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataatatttttctagaatatgctgctggcggtactctctc |
6222272 |
T |
|
| Q |
598 |
cgatcaactcaagaatcatggtggtaagttaccagagaatctcattcggcgttacaca |
655 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6222271 |
cgatcaactcaagaatcatggtggtaagttaccagagaatctcgttcggcgttacaca |
6222214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 463 - 625
Target Start/End: Complemental strand, 6233182 - 6233020
Alignment:
| Q |
463 |
aaacgagaaacaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataat |
562 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||| |||| |||| |||||| || || ||||| | ||||| | |||||||| ||| ||| |
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| T |
6233182 |
aaacgagaaacaaatactcgatcgtttaggatcatccccacatgttatcaagtgttttggccaagacaaaactgttgaaaacgatgaagagtattacaat |
6233083 |
T |
|
| Q |
563 |
atttttctagaatatgctgctggcggtactctctccgatcaactcaagaatcatggtggtaag |
625 |
Q |
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|||||||||||||| ||| || || |||||||||||||||||| |||| |||||||||||| |
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| T |
6233082 |
atttttctagaatacgctagcggtggaactctctccgatcaactcgagaaacatggtggtaag |
6233020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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