View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_5 (Length: 574)
Name: NF11154_low_5
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_5 |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 346 - 555
Target Start/End: Complemental strand, 441341 - 441132
Alignment:
| Q |
346 |
gaaccaacaaaaaagaacaaataattatgaagcatgtcacgcctcctgcatattttgaagtaaatgtgattaattctaatcgaatatggcaaacggacaa |
445 |
Q |
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| T |
441341 |
gaaccaacaaaaaagaacaaataattatgaagcatgtcacgcctcctgcatattttgaagtaaatgtgattaattctaatcgaatatggcaaacggacaa |
441242 |
T |
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| Q |
446 |
tgttataaaaactgggctcgcatacaatgccgcgacaattatcgccatcatagttgtgtctcgtttttgcttctttatctttaaaccccttcatcaatct |
545 |
Q |
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| T |
441241 |
tgttataaaaactggggtcgcctataatgccgcgacaattgtcgccatcatagttgtgtctcgtttttgcttctttatctttaaaccccttcatcaatct |
441142 |
T |
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| Q |
546 |
cgcatcattg |
555 |
Q |
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|||||||||| |
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| T |
441141 |
cgcatcattg |
441132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 124 - 325
Target Start/End: Complemental strand, 441566 - 441365
Alignment:
| Q |
124 |
gagtaacacgtaagaatgcatgcatgacttagcaccagaaaaaacggaaactcctatcaaatcaccattccattggttctcacccccatttccaaaaatt |
223 |
Q |
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| T |
441566 |
gagtaacacgtaagaatgcatgcatgacttagcaccagaaaaagctgaaactcctatcaaatcaccattccgttggttctcacccccatttccaaaaatt |
441467 |
T |
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| Q |
224 |
tcatttcttttcaattcttacacaaacaaatcattacaaccaccatgataataacaatgacaaagaccaccgcaacgcacacaaaattaaaaaccgcata |
323 |
Q |
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| T |
441466 |
tcatttctcttcaattcttacacaaacaaatcattacaaccaccatgataataacaatgacaaagaccaccgcaacgcacacaaaattaaaacccgcata |
441367 |
T |
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| Q |
324 |
tt |
325 |
Q |
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|| |
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| T |
441366 |
tt |
441365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 441678 - 441621
Alignment:
| Q |
12 |
atgaaaaaggatcgatggaagagaaaatataaattgaacaaatatagaagttgatagc |
69 |
Q |
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| T |
441678 |
atgaaaaaggatcgatagaagagaaaatataaattgaacaaatatagaagttgatagc |
441621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 554
Target Start/End: Original strand, 28606028 - 28606066
Alignment:
| Q |
516 |
ttctttatctttaaaccccttcatcaatctcgcatcatt |
554 |
Q |
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| T |
28606028 |
ttctttatctataaaccccttcatcaacctcgcatcatt |
28606066 |
T |
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