View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11154_low_6 (Length: 505)
Name: NF11154_low_6
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 42326006 - 42325519
Alignment:
| Q |
1 |
tgtaggggagagaca--gagagtaaaaggggtttgtttgatttgtcatctaatgtaacatgactaacatgaaacattcctgagggactagctagttgaaa |
98 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42326006 |
tgtaggggagagacaaagagagtaaaaggggtttgtttgatttgtcatctaatgtaacatgactaacatgaaacattcctgagggactagctagttgaaa |
42325907 |
T |
|
| Q |
99 |
tgaacagaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattata |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325906 |
tgaacagaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattata |
42325807 |
T |
|
| Q |
199 |
tcttgcatgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttttcct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42325806 |
tcttgcatgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactcc-tttcct |
42325708 |
T |
|
| Q |
299 |
caacaagaagagttatctgagttgtactcttaagtttccactcaactttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaacca |
398 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325707 |
caacaagaagaattatctgagttgtactcttaagtttccactcaaatttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaacca |
42325608 |
T |
|
| Q |
399 |
ctcattgttggaagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtctt |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325607 |
ctcattgttggaagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtctt |
42325519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University