View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11154_low_7 (Length: 500)

Name: NF11154_low_7
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11154_low_7
NF11154_low_7
[»] chr5 (23 HSPs)
chr5 (305-484)||(33936599-33936777)
chr5 (307-484)||(33959207-33959403)
chr5 (65-133)||(43259828-43259896)
chr5 (23-110)||(5131261-5131353)
chr5 (40-97)||(27514474-27514536)
chr5 (152-219)||(27514374-27514436)
chr5 (152-212)||(10476407-10476472)
chr5 (152-196)||(19914485-19914529)
chr5 (18-110)||(6644797-6644899)
chr5 (176-212)||(5131276-5131312)
chr5 (16-104)||(10476516-10476599)
chr5 (152-187)||(43259774-43259809)
chr5 (98-132)||(22920935-22920969)
chr5 (67-97)||(39797421-39797451)
chr5 (178-212)||(43259866-43259900)
chr5 (64-117)||(43259732-43259785)
chr5 (16-97)||(43259844-43259924)
chr5 (18-47)||(43399401-43399430)
chr5 (176-212)||(6644812-6644848)
chr5 (16-48)||(19914390-19914422)
chr5 (177-220)||(22920914-22920955)
chr5 (16-71)||(27946908-27946968)
chr5 (176-220)||(27946961-27947005)
[»] chr2 (10 HSPs)
chr2 (16-133)||(33381966-33382083)
chr2 (16-132)||(13783354-13783475)
chr2 (152-212)||(27080923-27080983)
chr2 (66-133)||(14108685-14108752)
chr2 (16-75)||(27081045-27081104)
chr2 (152-194)||(5722933-5722975)
chr2 (152-187)||(33381912-33381947)
chr2 (152-212)||(1483960-1484020)
chr2 (164-209)||(14108607-14108652)
chr2 (16-75)||(5722800-5722864)
[»] chr4 (30 HSPs)
chr4 (21-105)||(7672571-7672655)
chr4 (23-133)||(18740060-18740175)
chr4 (18-132)||(23780265-23780384)
chr4 (16-88)||(327064-327136)
chr4 (152-212)||(10395307-10395367)
chr4 (16-97)||(43364201-43364287)
chr4 (16-121)||(48141239-48141349)
chr4 (66-127)||(19747496-19747557)
chr4 (66-127)||(19792249-19792310)
chr4 (152-212)||(43364106-43364166)
chr4 (180-219)||(23780448-23780487)
chr4 (16-74)||(44833963-44834021)
chr4 (157-209)||(23689245-23689297)
chr4 (16-121)||(3257756-3257863)
chr4 (152-212)||(42540317-42540372)
chr4 (65-105)||(48284308-48284348)
chr4 (40-88)||(49761727-49761775)
chr4 (152-187)||(7672695-7672730)
chr4 (16-67)||(10381868-10381919)
chr4 (28-117)||(43955581-43955680)
chr4 (152-194)||(19677851-19677893)
chr4 (16-132)||(32896557-32896682)
chr4 (152-193)||(327157-327198)
chr4 (16-75)||(4621880-4621944)
chr4 (176-212)||(4621933-4621969)
chr4 (16-48)||(10395456-10395488)
chr4 (176-212)||(18740098-18740134)
chr4 (176-212)||(23780311-23780347)
chr4 (28-64)||(35523281-35523317)
chr4 (16-48)||(42540228-42540260)
[»] chr7 (23 HSPs)
chr7 (16-133)||(4922618-4922740)
chr7 (16-117)||(23803071-23803177)
chr7 (161-212)||(27305666-27305717)
chr7 (16-75)||(43341066-43341125)
chr7 (155-212)||(10596203-10596260)
chr7 (19-88)||(27305546-27305615)
chr7 (16-75)||(19367142-19367201)
chr7 (155-195)||(10596070-10596110)
chr7 (85-133)||(10596001-10596049)
chr7 (85-133)||(10596134-10596182)
chr7 (153-187)||(19367271-19367305)
chr7 (153-186)||(4922578-4922611)
chr7 (16-68)||(16813804-16813856)
chr7 (176-220)||(19367190-19367234)
chr7 (65-133)||(23777125-23777188)
chr7 (177-212)||(23777120-23777155)
chr7 (152-187)||(43951392-43951427)
chr7 (16-73)||(35912140-35912202)
chr7 (166-204)||(42731190-42731228)
chr7 (16-88)||(23167913-23167986)
chr7 (16-48)||(10595968-10596000)
chr7 (16-48)||(10596101-10596133)
chr7 (176-212)||(23777250-23777286)
[»] chr6 (9 HSPs)
chr6 (16-133)||(18271714-18271836)
chr6 (21-133)||(20836653-20836770)
chr6 (16-121)||(33427686-33427791)
chr6 (152-212)||(20836794-20836854)
chr6 (152-211)||(12852123-12852182)
chr6 (16-82)||(9619557-9619623)
chr6 (152-187)||(18271854-18271889)
chr6 (175-211)||(18271892-18271928)
chr6 (176-212)||(20836696-20836732)
[»] chr1 (13 HSPs)
chr1 (16-121)||(5993587-5993697)
chr1 (40-121)||(47756374-47756460)
chr1 (16-73)||(44011772-44011829)
chr1 (65-114)||(45376456-45376505)
chr1 (152-212)||(8812528-8812583)
chr1 (152-194)||(47930895-47930937)
chr1 (16-73)||(85720-85777)
chr1 (49-97)||(1345122-1345170)
chr1 (152-195)||(5993732-5993775)
chr1 (152-187)||(32567239-32567274)
chr1 (178-212)||(45376452-45376486)
chr1 (64-133)||(45376475-45376545)
chr1 (64-117)||(44011915-44011968)
[»] chr8 (8 HSPs)
chr8 (16-212)||(30595465-30595635)
chr8 (69-133)||(26099344-26099408)
chr8 (40-133)||(387604-387701)
chr8 (16-114)||(36700190-36700293)
chr8 (152-214)||(387723-387780)
chr8 (152-194)||(18605352-18605394)
chr8 (76-121)||(35699628-35699673)
chr8 (176-220)||(18605273-18605317)
[»] chr3 (16 HSPs)
chr3 (43-133)||(36343736-36343831)
chr3 (16-133)||(33186242-33186363)
chr3 (21-133)||(54801661-54801767)
chr3 (152-211)||(55216685-55216744)
chr3 (16-77)||(29630146-29630207)
chr3 (23-105)||(55216781-55216868)
chr3 (18-75)||(26662039-26662096)
chr3 (16-97)||(8473215-8473296)
chr3 (152-197)||(54801792-54801837)
chr3 (152-191)||(29630072-29630111)
chr3 (152-187)||(33186188-33186223)
chr3 (152-184)||(40654233-40654265)
chr3 (57-97)||(53741932-53741972)
chr3 (90-133)||(8473199-8473242)
chr3 (16-75)||(36436087-36436146)
chr3 (16-48)||(37152710-37152742)
[»] scaffold0024 (3 HSPs)
scaffold0024 (175-219)||(60220-60264)
scaffold0024 (85-133)||(60114-60162)
scaffold0024 (85-117)||(60207-60239)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 305 - 484
Target Start/End: Original strand, 33936599 - 33936777
Alignment:
Q  305 tgtcatattttgaatttattttagagatcatggttaggccgagttaaatatccctacaaatagcatataagaagctcgaagttcttcattcatatatact 404  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||  |||||||    
T  33936599 tgtcatattttgaatttattttagagatcatggttaggctgagttaaatatccctacgaatagcatataagaagctcaaagttcttcattc--atatact 33936696  T
Q  405 t-ggagtctgaaagaatagcatagtaaagtctatcacgcttctatggatctttcaaaatcgatgaggaaaaatgtggtttg 484  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33936697 tgggagtctgaaagaatagcatagtaaagtctatcacgcttctatggatctttcaaaatcgatgaggaaaaatgtggtttg 33936777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 307 - 484
Target Start/End: Original strand, 33959207 - 33959403
Alignment:
Q  307 tcatattttgaatttattttagagatcatggttaggccgagttaaatatccctacaaatagc---------------------atataagaagctcgaag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||| |||    
T  33959207 tcatattttgaatttattttagagatcatggttaggccgagttaaatatccctacaaatagcgcatatatccctacgaacagcatataagaagctcaaag 33959306  T
Q  386 ttcttcattcatatatacttggagtctgaaagaatagcatagtaaagtctatcacgcttctatggatctttcaaaatcgatgaggaaaaatgtggtttg 484  Q
    ||||||||||||||  ||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  33959307 ttcttcattcatat--acttggagtctgaaagaatattatggtaaagtctatcacgcttctatggatcttttaaaactgatgaggaaaaatgtggtttg 33959403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 43259896 - 43259828
Alignment:
Q  65 gaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  43259896 gaactgaactgtttcaaaccgaactgaactgttccgaactgaactgaactgttattattgatgcctttg 43259828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 5131353 - 5131261
Alignment:
Q  23 tttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactg-----tttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    |||||||||||||||||||  ||||| || ||||| |||||||||||||||||     ||||||||||||| |||||||| ||||||||||||    
T  5131353 tttgctaaatttaaaataatagaactgaactgtttacatttcgaactgaactgaactgtttcaaaccgaactgaactgtttcgaactgaactg 5131261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 27514536 - 27514474
Alignment:
Q  40 aactgaactaaattgtttgcatttcgaactgaac-----tgtttcaaaccgaaccgaactgtt 97  Q
    ||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||    
T  27514536 aactgaactaaattgtttgcatttcgaactgaactgaattgtttcaaaccgaaccgaactgtt 27514474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 27514436 - 27514374
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactgaactgtt 219  Q
    ||||||||||||||||||||||||||||||||     |||||||| |||||||||||||| |||||||    
T  27514436 caaatgaaattgaattttagttaccgaactga-----actgtttcgaatcgaactgaacttaactgtt 27514374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 10476472 - 10476407
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaact-----gaactgtttcaaatcgaactgaactg 212  Q
    |||| ||||||||||||||||||||||||||||||     |||||||||| |||||||||||||||    
T  10476472 caaacgaaattgaattttagttaccgaactgaactgaatcgaactgtttcgaatcgaactgaactg 10476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 19914485 - 19914529
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttc 196  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  19914485 caaatgaaattgaattttagttaccgaactaaactgaactctttc 19914529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 6644899 - 6644797
Alignment:
Q  18 aattgtttgctaaatttaaaataactgaactaaattg-----tttgcatttcgaactgaactg-----tttcaaaccgaaccgaactgttccgaactgaa 107  Q
    ||||||||||||||||||||||||||||| | ||  |     |||||||||||||||||||||     ||||||||||||  ||||||||| ||||||||    
T  6644899 aattgtttgctaaatttaaaataactgaattgaaccgaactatttgcatttcgaactgaactgaactgtttcaaaccgaattgaactgttctgaactgaa 6644800  T
Q  108 ctg 110  Q
    |||    
T  6644799 ctg 6644797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 5131312 - 5131276
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5131312 cgaactgaactgaactgtttcaaaccgaactgaactg 5131276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 10476599 - 10476516
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaact 104  Q
    |||| |||||| ||||||||||||||||||||     |||||| |||| |||||| |||||||||||| |||| ||||||  |||||||    
T  10476599 tgaactgtttgttaaatttaaaataactgaac-----tgtttgtattttgaactggactgtttcaaactgaactgaactgaaccgaact 10476516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 43259809 - 43259774
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactg 187  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43259809 caaatgaaattaaattttagttaccgaactgaactg 43259774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 22920935 - 22920969
Alignment:
Q  98 ccgaactgaactgaactgttattagtgataccttt 132  Q
    |||||||||||||||||||||||| ||||||||||    
T  22920935 ccgaactgaactgaactgttattattgataccttt 22920969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 39797451 - 39797421
Alignment:
Q  67 actgaactgtttcaaaccgaaccgaactgtt 97  Q
    |||||||||||||||||||||||||||||||    
T  39797451 actgaactgtttcaaaccgaaccgaactgtt 39797421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 43259900 - 43259866
Alignment:
Q  178 aactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||| ||||||||||||    
T  43259900 aactgaactgaactgtttcaaaccgaactgaactg 43259866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 43259785 - 43259732
Alignment:
Q  64 cgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgtt 117  Q
    |||||||||||||||| || |||||  ||||||| |||||||||||||| ||||    
T  43259785 cgaactgaactgtttcgaatcgaactaaactgtttcgaactgaactgaattgtt 43259732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 43259924 - 43259844
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgtt 97  Q
    |||| |||||| ||||||||||||||||||||| || ||||| ||   |||||||||||||| | ||| |||| ||||||||    
T  43259924 tgaactgtttgttaaatttaaaataactgaactgaactgttt-caaaccgaactgaactgttccgaactgaactgaactgtt 43259844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 43399401 - 43399430
Alignment:
Q  18 aattgtttgctaaatttaaaataactgaac 47  Q
    ||||||||||||||||||||||||||||||    
T  43399401 aattgtttgctaaatttaaaataactgaac 43399430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 6644848 - 6644812
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6644848 cgaactgaactgaactgtttcaaaccgaattgaactg 6644812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 19914390 - 19914422
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaact 48  Q
    |||| ||||||||||||||||||||||||||||    
T  19914390 tgaactgtttgctaaatttaaaataactgaact 19914422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 22920914 - 22920955
Alignment:
Q  177 gaactgaactgaactgtttcaaatcgaactgaactgaactgtta 220  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||    
T  22920914 gaactgaactga--tgtttcaaaccgaactgaactgaactgtta 22920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 27946908 - 27946968
Alignment:
Q  16 tgaattgtttgctaaatttaaaat-----aactgaactaaattgtttgcatttcgaactga 71  Q
    ||||||||||| ||||||||||||     ||||||||| ||||||||| ||||||||||||    
T  27946908 tgaattgtttgttaaatttaaaataactaaactgaactgaattgtttgtatttcgaactga 27946968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 27946961 - 27947005
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 220  Q
    |||||||| ||||| ||||| |||||||||||||| |||||||||    
T  27946961 cgaactgagctgaattgttttaaatcgaactgaacagaactgtta 27947005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 33382083 - 33381966
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactg 115  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  33382083 tgaattgtttgctaactttaaaataactgaacttaactgtttgcatttcgaattgaactgtttcaaaccgaactgaactgttccgaactgaattgaactg 33381984  T
Q  116 ttattagtgatacctttg 133  Q
    |||||| |||||||||||    
T  33381983 ttattattgatacctttg 33381966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 13783475 - 13783354
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatt-----tcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||     | ||||||||||||||||||| |||| |||||| |  ||| ||||| |    
T  13783475 tgaattgtttgttaaatttaaaataactaaactgaattgtttgcattttaaattgaactgaactgtttcaaacagaactgaactgatttgaattgaaccg 13783376  T
Q  111 aactgttattagtgataccttt 132  Q
    ||||||||||| ||||||||||    
T  13783375 aactgttattattgataccttt 13783354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 27080983 - 27080923
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  27080983 caaatgaaattgaattttagttaccaaactgaactgaactgtttcgaatcgaactgaactg 27080923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 14108752 - 14108685
Alignment:
Q  66 aactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    ||||||| ||||||||   |||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  14108752 aactgaattgtttcaaggtgaactgaactgttccaaactgaactgaactgttattattgatacctttg 14108685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 27081104 - 27081045
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactg 75  Q
    |||| |||||||||||||||||||||||||| | || ||||||||||| |||||||||||    
T  27081104 tgaactgtttgctaaatttaaaataactgaattgaactgtttgcattttgaactgaactg 27081045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 5722933 - 5722975
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtt 194  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  5722933 caaacgaaattgaattttagttaccgaactgaactgaactgtt 5722975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 33381947 - 33381912
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactg 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  33381947 caaatgaaattgaattttagttaccgaactgaactg 33381912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 1484020 - 1483960
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||| |||||| |||||||| |||| || ||||| ||||||||||||||||||| ||||||    
T  1484020 caaacgaaattaaattttagctaccaaattgaaccgaactgtttcaaatcgaacggaactg 1483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 14108652 - 14108607
Alignment:
Q  164 aattttagttaccgaactgaactgaactgtttcaaatcgaactgaa 209  Q
    |||||||||||||||||||||||||| |||||| || | |||||||    
T  14108652 aattttagttaccgaactgaactgaattgtttcgaaccaaactgaa 14108607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 5722800 - 5722864
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaa-----ctaaattgtttgcatttcgaactgaactg 75  Q
    |||||| ||||||||||||||||||||||||     || |||||||||||||| |||| ||||||    
T  5722800 tgaattatttgctaaatttaaaataactgaattgaactgaattgtttgcattttgaacggaactg 5722864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 7672571 - 7672655
Alignment:
Q  21 tgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaactg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7672571 tgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaattgaactgtttcaaaccgaaccgaactgttccgaactg 7672655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 18740175 - 18740060
Alignment:
Q  23 tttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactg-----tttcaaaccgaaccgaactgttccgaactgaactgaactgtt 117  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||     ||||||||||||| |||||||| |||||||||| ||||||||    
T  18740175 tttgctaaatttaaaataatagaactgaattgtttgcatttcgaactgaactgaattgtttcaaaccgaactgaactgtttcgaactgaaccgaactgtt 18740076  T
Q  118 attagtgatacctttg 133  Q
    || | |||||||||||    
T  18740075 ataattgatacctttg 18740060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 23780265 - 23780384
Alignment:
Q  18 aattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaac-----tgaactgtttcaaaccgaaccgaactgttccgaactgaactgaa 112  Q
    ||||||||||||||| |||||||| |||||| || |||||| |||||||||     |||||||||||||||| ||| |||||||| |||||||||| |||    
T  23780265 aattgtttgctaaatctaaaataattgaactgaactgtttgtatttcgaactgaactgaactgtttcaaaccaaactgaactgtttcgaactgaaccgaa 23780364  T
Q  113 ctgttattagtgataccttt 132  Q
     |||||||| ||||||||||    
T  23780365 ttgttattattgataccttt 23780384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 327064 - 327136
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaac 88  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||  || ||||||||||||||||||||    
T  327064 tgaattgtttgctaaatttaaaataactgaactgaactgtttgcattttaaattgaactgtttcaaaccgaac 327136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 10395367 - 10395307
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  10395367 caaatgaaattgaattttaattaccgaactgaactgaacagtttcaaatcgaactgaactg 10395307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 43364287 - 43364201
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcattt-----cgaactgaactgtttcaaaccgaaccgaactgtt 97  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||     ||||||||||||||| ||||||||| ||||||||    
T  43364287 tgaactgtttgctaaatttaaaataactgaactgaactgtttgcatttcgaatcgaactgaactgttttaaaccgaactgaactgtt 43364201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 48141349 - 48141239
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaac-----tgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||| || || |||     ||||||||||||||| ||| ||||| |||| ||||      
T  48141349 tgaactgtttgctaaatttaaaataactgaactgaattgtttgcattttgatctaaactatattgtttcaaaccgaactgaattgttctgaacagaacca 48141250  T
Q  111 aactgttatta 121  Q
    || ||||||||    
T  48141249 aaatgttatta 48141239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 19747557 - 19747496
Alignment:
Q  66 aactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgata 127  Q
    |||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||| |||||    
T  19747557 aactgaactgtttcaaactgaactgaactgttctgaactgaaccgaactgttattattgata 19747496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 19792249 - 19792310
Alignment:
Q  66 aactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgata 127  Q
    |||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||| |||||    
T  19792249 aactgaactgtttcaaactgaactgaactgttctgaactgaaccgaactgttattattgata 19792310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 43364166 - 43364106
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||  |||||||||||||||    
T  43364166 caaatgaaattgaagtttagttaccaaaccgaactgaactgttttgaatcgaactgaactg 43364106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 23780448 - 23780487
Alignment:
Q  180 ctgaactgaactgtttcaaatcgaactgaactgaactgtt 219  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23780448 ctgaactgaactgtttcaaatcgaactgaactgaactgtt 23780487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 44833963 - 44834021
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaact 74  Q
    |||| |||||||||||||||||||||||||||| || |||||| |||| ||||||||||    
T  44833963 tgaactgtttgctaaatttaaaataactgaactgaactgtttgtattttgaactgaact 44834021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 23689297 - 23689245
Alignment:
Q  157 gaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaa 209  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  23689297 gaaatcgaattttagttaccgaactgaattgaactgtttcgaatggaactgaa 23689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 3257863 - 3257756
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaact--gtttcaaaccgaaccgaactgttccgaactgaactgaac 113  Q
    |||| |||||| |||||||| ||||| |||||| || |||||||| |||||||| || |  ||| |||| |||||||||||||| ||||| | ||| ||     
T  3257863 tgaactgtttggtaaatttataataattgaactgaactgtttgcaattcgaactaaattatgttccaaatcgaaccgaactgtttcgaaccggactaaat 3257764  T
Q  114 tgttatta 121  Q
    ||||||||    
T  3257763 tgttatta 3257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 42540317 - 42540372
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    ||||||||||||| |||||||||||     ||||||||||||||||| |||||||||||||    
T  42540317 caaatgaaattgagttttagttacc-----gaactgaactgtttcaagtcgaactgaactg 42540372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 48284348 - 48284308
Alignment:
Q  65 gaactgaactgtttcaaaccgaaccgaactgttccgaactg 105  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  48284348 gaaccgaactgtttcaaaccaaaccgaactgttccgaactg 48284308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 49761727 - 49761775
Alignment:
Q  40 aactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaac 88  Q
    |||||||||||| ||||| | ||||||||||||||||| ||||||||||    
T  49761727 aactgaactaaactgtttacttttcgaactgaactgttacaaaccgaac 49761775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 7672695 - 7672730
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactg 187  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7672695 caaatgaaattgaattttagttaccaaactgaactg 7672730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 10381868 - 10381919
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaa 67  Q
    |||| ||||||||||||||||||||| |||||| || || ||||||||||||    
T  10381868 tgaactgtttgctaaatttaaaataaatgaactgaactggttgcatttcgaa 10381919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 43955680 - 43955581
Alignment:
Q  28 taaatttaaaataactgaactaaat-----tgtttgcatttcgaact-----gaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgtt 117  Q
    ||||||||||||||||||||| |||     |||||||||||||||||     |||||||| ||||||||| ||||||||| ||||| |||| ||| ||||    
T  43955680 taaatttaaaataactgaacttaatcgaactgtttgcatttcgaactgaacagaactgttccaaaccgaaacgaactgtttcgaaccgaaccgaattgtt 43955581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 19677893 - 19677851
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtt 194  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||    
T  19677893 caaaagaaatcgaattttagttaccgaattgaactgaactgtt 19677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 32896682 - 32896557
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactga-----actaaattgtttgcatttcgaactgaac-----tgtttcaaaccgaaccgaactgttccgaactg 105  Q
    |||| |||||||||||||||| ||||||||     ||  || ||||||||||| |||||||||     ||||| ||||||||||||| ||||  ||| ||    
T  32896682 tgaactgtttgctaaatttaagataactgagttgaaccgaactgtttgcattttgaactgaaccgaattgttttaaaccgaaccgaattgttt-gaaatg 32896584  T
Q  106 aactgaactgttattagtgataccttt 132  Q
    ||| |||||||||||| ||||||||||    
T  32896583 aaccgaactgttattattgataccttt 32896557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 327157 - 327198
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgt 193  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  327157 caaatgaaattgaattttagttacaaaactgaactaaactgt 327198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 4621880 - 4621944
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactg-----aactaaattgtttgcatttcgaactgaactg 75  Q
    |||| |||||| ||||||||| |||||||     ||| |||||||||||||||||||||||||||    
T  4621880 tgaactgtttgataaatttaatataactggaccaaaccaaattgtttgcatttcgaactgaactg 4621944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 4621933 - 4621969
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4621933 cgaactgaactgaactgtttcaaaccgaattgaactg 4621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 10395488 - 10395456
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaact 48  Q
    |||| ||||||||||||||||||||||||||||    
T  10395488 tgaactgtttgctaaatttaaaataactgaact 10395456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 18740134 - 18740098
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  18740134 cgaactgaactgaattgtttcaaaccgaactgaactg 18740098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 23780311 - 23780347
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||||| | ||||||||||    
T  23780311 cgaactgaactgaactgtttcaaaccaaactgaactg 23780347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 35523281 - 35523317
Alignment:
Q  28 taaatttaaaataactgaactaaattgtttgcatttc 64  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  35523281 taaatttaaaataactgaactcaattgtttgaatttc 35523317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 42540228 - 42540260
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaact 48  Q
    |||||||||||||||||||||||||| ||||||    
T  42540228 tgaattgtttgctaaatttaaaataattgaact 42540260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 4922740 - 4922618
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaac-----tgaactgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    |||||||||||||||||||||||||||||||||||| | ||| ||||||||||     |||||||||| |||| |||| ||||||||||||||||||||     
T  4922740 tgaattgtttgctaaatttaaaataactgaactaaactatttacatttcgaaccgaactgaactgttttaaactgaactgaactgttccgaactgaacta 4922641  T
Q  111 aactgttattagtgatacctttg 133  Q
    ||||||||||| |||||||||||    
T  4922640 aactgttattattgatacctttg 4922618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 23803071 - 23803177
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttc-----gaactgaactgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    |||||||||||||||||||||||||| |||||| || ||||| ||||||     |||||||||||||||||||||||| ||| ||||||||||||||  |    
T  23803071 tgaattgtttgctaaatttaaaataattgaactgaactgtttacatttcgaattgaactgaactgtttcaaaccgaactgaattgttccgaactgaatcg 23803170  T
Q  111 aactgtt 117  Q
    |||||||    
T  23803171 aactgtt 23803177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 27305666 - 27305717
Alignment:
Q  161 ttgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27305666 ttgaattttagttaccggactgaactgaactgtttcaaatcgaactgaactg 27305717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 43341066 - 43341125
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactg 75  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43341066 tgaattgtttgataaatttaaaataactgaactaaaccgtttgcatttcgaactgaactg 43341125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 10596203 - 10596260
Alignment:
Q  155 atgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  10596203 atgaaattgaattttagttaccgaactgaactgaactgttttgaatcgaattgaactg 10596260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 27305546 - 27305615
Alignment:
Q  19 attgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaac 88  Q
    ||||||||||||||||||||||||| |||| || |||| |||||| ||| ||||||||||||||||||||    
T  27305546 attgtttgctaaatttaaaataactaaactgaactgttagcattttgaattgaactgtttcaaaccgaac 27305615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 19367142 - 19367201
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactg 75  Q
    |||| |||||||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  19367142 tgaactgtttgctaaatttaaaataactgaactgaactgtttgtatttcgaactgaactg 19367201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 10596070 - 10596110
Alignment:
Q  155 atgaaattgaattttagttaccgaactgaactgaactgttt 195  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10596070 atgaaattgaattttagttaccgaactgaactgaactgttt 10596110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 10596001 - 10596049
Alignment:
Q  85 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  10596001 gaactgaactgttccgaactgaagtgaactgttattattgatacctttg 10596049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 10596134 - 10596182
Alignment:
Q  85 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  10596134 gaactgaactgttccgaactgaagtgaactgttattattgatacctttg 10596182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 19367271 - 19367305
Alignment:
Q  153 aaatgaaattgaattttagttaccgaactgaactg 187  Q
    |||||||||||||||||||||||||||||||||||    
T  19367271 aaatgaaattgaattttagttaccgaactgaactg 19367305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 4922611 - 4922578
Alignment:
Q  153 aaatgaaattgaattttagttaccgaactgaact 186  Q
    ||||||||||||||||||||||||||||||||||    
T  4922611 aaatgaaattgaattttagttaccgaactgaact 4922578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 16813856 - 16813804
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaac 68  Q
    |||| |||||||||||||||||||||||||||  || ||||||||||| ||||    
T  16813856 tgaactgtttgctaaatttaaaataactgaacagaactgtttgcattttgaac 16813804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 19367190 - 19367234
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 220  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  19367190 cgaactgaactgaattgtttcaaacagaactgaactgaactgtta 19367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 23777125 - 23777188
Alignment:
Q  65 gaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    |||||||||||||||||||||||| |||||| |      |||||||||||||||||| |||||||||||    
T  23777125 gaactgaactgtttcaaaccgaactgaactgct-----atgaactgaactgttattattgatacctttg 23777188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 23777120 - 23777155
Alignment:
Q  177 gaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23777120 gaactgaactgaactgtttcaaaccgaactgaactg 23777155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 43951392 - 43951427
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactg 187  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43951392 caaatgaaattgaattttaattaccgaactgaactg 43951427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 35912202 - 35912140
Alignment:
Q  16 tgaattgtttgctaaatttaaaataact-----gaactaaattgtttgcatttcgaactgaac 73  Q
    ||||||||||  ||||||||||||||||      |||||||||||||||||||||||||||||    
T  35912202 tgaattgttttttaaatttaaaataacttaaccaaactaaattgtttgcatttcgaactgaac 35912140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 42731190 - 42731228
Alignment:
Q  166 ttttagttaccgaactgaactgaactgtttcaaatcgaa 204  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  42731190 ttttagttaccaaactgaactgaactgtttcgaatcgaa 42731228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 23167986 - 23167913
Alignment:
Q  16 tgaattgtttgctaaatt-taaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaac 88  Q
    |||||||||||||||| | |||||||||| |||   | |||||||||||||| |||||||| | ||||||||||    
T  23167986 tgaattgtttgctaaaatctaaaataactaaacggcactgtttgcatttcgatctgaactggtccaaaccgaac 23167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 10595968 - 10596000
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaact 48  Q
    |||| ||||||||||||||||||||||||||||    
T  10595968 tgaactgtttgctaaatttaaaataactgaact 10596000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 10596101 - 10596133
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaact 48  Q
    |||| ||||||||||||||||||||||||||||    
T  10596101 tgaactgtttgctaaatttaaaataactgaact 10596133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 23777250 - 23777286
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  23777250 cgaactgaattgaactgtttcgaatcgaactgaactg 23777286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 18271714 - 18271836
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcattt-----cgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    |||| ||| |||||||||||||||||||||||| || |||||||||||     | ||||||||||||||||||||||| |||||||||||||||||||||    
T  18271714 tgaactgtgtgctaaatttaaaataactgaactgaactgtttgcatttcaaaccaaactgaactgtttcaaaccgaactgaactgttccgaactgaactg 18271813  T
Q  111 aactgttattagtgatacctttg 133  Q
    || |||||||| |||||||||||    
T  18271814 aattgttattattgatacctttg 18271836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 20836653 - 20836770
Alignment:
Q  21 tgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaac-----tgtttcaaaccgaaccgaactgttccgaactgaactgaactg 115  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||||     ||||||||||||||| |||||||||| ||||||| |||||||    
T  20836653 tgtttgctaaatctaaaataactgaactgaactgtttgcatttcgaactgaacggaactgtttcaaaccgaactgaactgttccaaactgaattgaactg 20836752  T
Q  116 ttattagtgatacctttg 133  Q
    |||||| |||||||||||    
T  20836753 ttattattgatacctttg 20836770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 33427686 - 33427791
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactg 115  Q
    |||||| |||| ||||||||||||||||||| | || ||||||||||| |||||||||||||||||| ||||   |||||||||||||||||| ||||||    
T  33427686 tgaattatttgttaaatttaaaataactgaattgaactgtttgcattttgaactgaactgtttcaaatcgaattaaactgttccgaactgaaccgaactg 33427785  T
Q  116 ttatta 121  Q
    ||||||    
T  33427786 ttatta 33427791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 20836794 - 20836854
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  20836794 caaatgaaattgaattttagttaccgaactgaactgaactgtttcgaatcgaattgaactg 20836854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 12852182 - 12852123
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaact 211  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||    
T  12852182 caaatgaaattgaattttagttatcaaagtgaaccgaactgtttcaaatcgaactgaact 12852123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 9619623 - 9619557
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaa 82  Q
    |||| ||||||  |||||||||||||||||||  || ||||||||||| ||||||||||||||||||    
T  9619623 tgaactgtttgtcaaatttaaaataactgaaccgaactgtttgcattttgaactgaactgtttcaaa 9619557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 18271854 - 18271889
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactg 187  Q
    |||||||||||||||||||||||| |||||||||||    
T  18271854 caaatgaaattgaattttagttactgaactgaactg 18271889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 18271892 - 18271928
Alignment:
Q  175 ccgaactgaactgaactgtttcaaatcgaactgaact 211  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  18271892 ccgaactgcactgaactgtttcgaatcgaactgaact 18271928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 20836696 - 20836732
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  20836696 cgaactgaacggaactgtttcaaaccgaactgaactg 20836732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 5993587 - 5993697
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaa-----ttgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    ||||||||| |||||||||||||||| |||||||||     ||||||||||||||||||||| ||||||||||||||  |||||| |||||| ||||| |    
T  5993587 tgaattgttcgctaaatttaaaataattgaactaaaccaaattgtttgcatttcgaactgaattgtttcaaaccgaattgaactgctccgaattgaaccg 5993686  T
Q  111 aactgttatta 121  Q
    |||||||||||    
T  5993687 aactgttatta 5993697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 47756460 - 47756374
Alignment:
Q  40 aactgaactaaattgtttgcatttcgaactgaact-----gtttcaaaccgaaccgaactgttccgaactgaactgaactgttatta 121  Q
    ||||||||  |||| |||||||||||||||||||      ||||||||  ||||||||||||||||||| |||||||||||||||||    
T  47756460 aactgaaccgaattttttgcatttcgaactgaaccaaagagtttcaaattgaaccgaactgttccgaaccgaactgaactgttatta 47756374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 44011772 - 44011829
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaac 73  Q
    |||| |||||| ||||||||| ||||||||||| || |||||||||||||||||||||    
T  44011772 tgaactgtttgataaatttaatataactgaactgaactgtttgcatttcgaactgaac 44011829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 45376456 - 45376505
Alignment:
Q  65 gaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaact 114  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  45376456 gaactgaactgtttcaaaccgaactgaactgttccgaatcgaactgaact 45376505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 8812528 - 8812583
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||    
T  8812528 caaatgaaattgaattttagttacc-----gaactgaactgtttcaaattgaactgaactg 8812583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 47930895 - 47930937
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtt 194  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  47930895 caaacgaaattgaattttagttaccgaactgaactggactgtt 47930937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 85720 - 85777
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaac 73  Q
    |||| ||||||||||||||||||||| |||| | || | |||||||||||||||||||    
T  85720 tgaactgtttgctaaatttaaaataattgaattgaaatatttgcatttcgaactgaac 85777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 1345170 - 1345122
Alignment:
Q  49 aaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgtt 97  Q
    |||||||||| |||||||||||||||||| |||| ||||||||| ||||    
T  1345170 aaattgtttgtatttcgaactgaactgttccaaatcgaaccgaattgtt 1345122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 5993732 - 5993775
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgttt 195  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||    
T  5993732 caaacgaaatcgaattatagttaccgaactgaactgaactgttt 5993775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 32567239 - 32567274
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactg 187  Q
    |||||||||||||||||||||||||||| |||||||    
T  32567239 caaatgaaattgaattttagttaccgaattgaactg 32567274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 45376452 - 45376486
Alignment:
Q  178 aactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||||||||||||||||||| ||||||||||||    
T  45376452 aactgaactgaactgtttcaaaccgaactgaactg 45376486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 45376475 - 45376545
Alignment:
Q  64 cgaactgaactgtttcaaaccgaaccgaactgttcc-gaactgaactgaactgttattagtgatacctttg 133  Q
    |||||||||||||| | || ||||| ||||| ||   |||||||||||||||||||||| |||||||||||    
T  45376475 cgaactgaactgttccgaatcgaactgaactttttttgaactgaactgaactgttattattgatacctttg 45376545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 44011915 - 44011968
Alignment:
Q  64 cgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgtt 117  Q
    |||||||||||||||| |||||||||||| ||||  ||||||||| ||| ||||    
T  44011915 cgaactgaactgtttcgaaccgaaccgaattgttttgaactgaaccgaattgtt 44011968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 30595465 - 30595635
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactg 115  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||               ||||| ||||||||||||||||||||    
T  30595465 tgaattgtttgctaaatttaaaataaccgaactgaattgtttgcatttcgaattgaact---------------gaactattccgaactgaactgaactg 30595549  T
Q  116 ttattagtgatacctttgnnnnnnnnnnnnnnnnnncaaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 212  Q
    |||||| |||||||||||                  |||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  30595550 ttattattgatacctttg-----------aaaaaaacaaatgaaattgaattttagttaccgaattgaactgaactgttttgaatcgaactgtactg 30595635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 26099344 - 26099408
Alignment:
Q  69 tgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    |||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||||| ||||    
T  26099344 tgaactgtttcaaatcgaactgaactgttacaaactgaactgaactgttattattgatacatttg 26099408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 387604 - 387701
Alignment:
Q  40 aactgaactaaattgtttgcatttcgaactgaact-----gtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    ||||||||  |||||||| ||||||||||||||||     ||||||| |||||| || |||||||||||||||| |||||||||||| | |||||||||    
T  387604 aactgaaccgaattgtttacatttcgaactgaactaaactgtttcaa-ccgaactgagctgttccgaactgaaccgaactgttattattaatacctttg 387701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 36700293 - 36700190
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaat-----tgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    |||| |||||| |||||||||| ||||||||||||||     ||||||| ||||||||||||||||| |||| ||||| | |||||| | ||  ||||||    
T  36700293 tgaactgtttgttaaatttaaattaactgaactaaatcgacatgtttgcgtttcgaactgaactgttacaaatcgaactgcactgttgcaaatcgaactg 36700194  T
Q  111 aact 114  Q
    ||||    
T  36700193 aact 36700190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 387723 - 387780
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactgaa 214  Q
    ||||||||||||||||||||||||  ||   |||||||||||||| |||||||||||||||||    
T  387723 caaatgaaattgaattttagttac--aa---aactgaactgtttcgaatcgaactgaactgaa 387780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 18605352 - 18605394
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtt 194  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  18605352 caaacgaaatagaattttagttaccaaactgaactgaactgtt 18605394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 35699673 - 35699628
Alignment:
Q  76 tttcaaaccgaaccgaactgttccgaactgaactgaactgttatta 121  Q
    |||| ||| ||||||||||||| | |||||||||||||||||||||    
T  35699673 tttcgaactgaaccgaactgttgcaaactgaactgaactgttatta 35699628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 18605273 - 18605317
Alignment:
Q  176 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 220  Q
    |||||||||||||||||||||||| |||| | ||| |||||||||    
T  18605273 cgaactgaactgaactgtttcaaaccgaattaaaccgaactgtta 18605317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 36343831 - 36343736
Alignment:
Q  43 tgaactaaattgtttgcatt-----tcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    ||||||||||||||||||||     | |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| | |||||||||||    
T  36343831 tgaactaaattgtttgcattttgaattgaactgaactgtttcaaaccaaactgaactgttccgaactgaaccgaactgttatcattgatacctttg 36343736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 33186363 - 33186242
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaa-----ctgtttcaaaccgaaccgaactgttccgaactgaactg 110  Q
    |||| |||||| ||||||||||||||||||||| || |||| ||||||| |||||||     |||||||||||||||| ||| |||||| |||| |||||    
T  33186363 tgaactgtttgttaaatttaaaataactgaactgaactgtt-gcatttcaaactgaattgaactgtttcaaaccgaactgaattgttccaaactaaactg 33186265  T
Q  111 aactgttattagtgatacctttg 133  Q
    || |||||||| |||||||||||    
T  33186264 aattgttattattgatacctttg 33186242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 54801661 - 54801767
Alignment:
Q  21 tgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttatt 120  Q
    ||||||||||||||||||||| ||     |||||||||||||| |||||||| ||||||||||||||| |||||||| | |||| || |||||| |||||    
T  54801661 tgtttgctaaatttaaaataattg-----aattgtttgcattttgaactgaaatgtttcaaaccgaactgaactgtttcaaactaaattgaact-ttatt 54801754  T
Q  121 agtgatacctttg 133  Q
    | |||||||||||    
T  54801755 attgatacctttg 54801767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 55216744 - 55216685
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaact 211  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  55216744 caaatgaaattgaattttagttatcgaactgaactggactgtttcgaatcgaactgaact 55216685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 29630207 - 29630146
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtt 77  Q
    |||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  29630207 tgaactgtttgctaaatttgaaataactgaactgaactgtttgcatttcgaactgaactgtt 29630146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 55216868 - 55216781
Alignment:
Q  23 tttgctaaatttaaaataactgaactaaattgtttgcatttcgaactga-----actgtttcaaaccgaaccgaactgttccgaactg 105  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||     |||||||||| | |||| ||||||||||||||||    
T  55216868 tttgttaaatttaaaataactgaactgaactgtttgcatttcgaactgaactgaactgtttcaaccagaactgaactgttccgaactg 55216781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 26662096 - 26662039
Alignment:
Q  18 aattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactg 75  Q
    ||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  26662096 aattgcttgctaaatttaaaataactaaactgaactgtttgcatttcgaactgaactg 26662039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 8473296 - 8473215
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactgtttcaaaccgaaccgaactgtt 97  Q
    |||| |||||||||||| |||| |||||||||| || | ||||||||| ||| ||||||||| | ||| |||||||||||||    
T  8473296 tgaactgtttgctaaatctaaactaactgaactgaactctttgcattttgaattgaactgttccgaactgaaccgaactgtt 8473215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 54801792 - 54801837
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaactgtttca 197  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  54801792 caaacgaaatcgaattttagttaccgaactgaactgaactgtttca 54801837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 29630111 - 29630072
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactgaact 191  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29630111 caaatgaaattgaattttagttcccgaactgaactgaact 29630072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 33186223 - 33186188
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaactg 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  33186223 caaatgaaattgaattttagttaccgaactgaactg 33186188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 40654233 - 40654265
Alignment:
Q  152 caaatgaaattgaattttagttaccgaactgaa 184  Q
    |||||||||||||||||||||||||||||||||    
T  40654233 caaatgaaattgaattttagttaccgaactgaa 40654265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 53741972 - 53741932
Alignment:
Q  57 tgcatttcgaactgaactgtttcaaaccgaaccgaactgtt 97  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  53741972 tgcatttcgaactgaactgtttcaaatcgaatcgaactgtt 53741932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 8473242 - 8473199
Alignment:
Q  90 gaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||    
T  8473242 gaactgttccgaactgaaccgaactgttattattgatacttttg 8473199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 36436087 - 36436146
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaactgaactg 75  Q
    |||| ||||||||||||||||||||||| || | || ||||| ||||||||||| |||||    
T  36436087 tgaactgtttgctaaatttaaaataactaaattgaactgtttccatttcgaactaaactg 36436146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 37152742 - 37152710
Alignment:
Q  16 tgaattgtttgctaaatttaaaataactgaact 48  Q
    |||| ||||||||||||||||||||||||||||    
T  37152742 tgaactgtttgctaaatttaaaataactgaact 37152710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 60220 - 60264
Alignment:
Q  175 ccgaactgaactgaactgtttcaaatcgaactgaactgaactgtt 219  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  60220 ccgaactgaactgaactgtttcgaatcgaactgaactgaattgtt 60264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 60114 - 60162
Alignment:
Q  85 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 133  Q
    |||| |||||||| | ||||||||||||||||||||| |||||||||||    
T  60114 gaactgaactgtttcaaactgaactgaactgttattattgatacctttg 60162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 60207 - 60239
Alignment:
Q  85 gaaccgaactgttccgaactgaactgaactgtt 117  Q
    |||| ||||||||||||||||||||||||||||    
T  60207 gaactgaactgttccgaactgaactgaactgtt 60239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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