View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_8 (Length: 491)
Name: NF11154_low_8
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 293 - 480
Target Start/End: Complemental strand, 7884832 - 7884645
Alignment:
| Q |
293 |
tctcatcaaacaatatcattatatcaattcaaagctatgttggtgcttgataaatgataatgttcaatggaaacgattttaccttattttacaacagatt |
392 |
Q |
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| T |
7884832 |
tctcatcaaacaatatcattatatcaattcaaagctgtgttggtgcttgataaatgataatgttcaatggaaacgattttaccttattttacaacagatt |
7884733 |
T |
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| Q |
393 |
ttaatttcaagagatctttccttatactttcagcaagatgtacccagctgtaacatatcattcttactgagagcagttcattcttcat |
480 |
Q |
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| T |
7884732 |
ttaatttcaagagatctttccttatactttcaccaagatgtacccagctgtaacatatcattcttactgagagcagttcattcttcat |
7884645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 7885231 - 7885150
Alignment:
| Q |
20 |
aaaggttgaggaataggtgcagggatggaagtggaaacaccagcaggaagaatctaatatgtgattatgagatggaaaagaa |
101 |
Q |
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| T |
7885231 |
aaaggttgaggaataggtgcagggatggaagtggaaacaccagcaggaagaatctaatatgtgattatgagatggaaaagaa |
7885150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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