View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11154_low_9 (Length: 448)
Name: NF11154_low_9
Description: NF11154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11154_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 115 - 438
Target Start/End: Original strand, 30239999 - 30240322
Alignment:
| Q |
115 |
ctcgaaatggtcaaaaaggtttccggggaataccgggtgaaaataagtgctagaagtttaatgacaagtagggtaatattggaatttttt-ataatttgt |
213 |
Q |
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| T |
30239999 |
ctcgaaatggtcaaaaaggtttccggggaatacggggtgaaaataagtgcttgaagtttaatgacaagtagggtaatattggaatttttttataatttgt |
30240098 |
T |
|
| Q |
214 |
aggggtggaagtaatagggtaaaattttctttgtaacgattggtgaagattgtgatgtgtaaaggtcttcttcaaagcatgacttctacatttactccag |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
30240099 |
aggg-tggaagtaatagggtaaaattttctttgtaacgattggtgaagattgtgatgtgtaaaggtcctcttcaaagcacgacttctacatttactctag |
30240197 |
T |
|
| Q |
314 |
tccatagattatttgacgtataaaacaccctattgaaagaagataaaagaacattagtagaaatttttaacatttatttgataagtaacctttcaccttt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30240198 |
tccatagattatttgacgtataaaacaccctattgaaagaagataaaagaacattagtagaaatttttaacatttatttgataagtaatctttcaccttt |
30240297 |
T |
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| Q |
414 |
aagatgaataaatgacgaacatctc |
438 |
Q |
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| T |
30240298 |
aagatgaataaatgacgaacatctc |
30240322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 34674920 - 34675379
Alignment:
| Q |
20 |
agcgatggggttcaatggcatgcaggatttataataatgatttaactaatttccgaactcattcttcattgctttcttgaagataaatttacatactcga |
119 |
Q |
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| T |
34674920 |
agcgatgaggttcaatggaatgcatgatttaaaagaatgatttaactaatttcgaaactcattcttcattgctttattgaagataaatttacatactcta |
34675019 |
T |
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| Q |
120 |
aatggtcaaaaaggtttccggggaatacc-------------------gggtgaaaataagtgctagaagtttaat--------gacaagtagggtaata |
192 |
Q |
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| T |
34675020 |
aatggttaaaaaggtttacggggaatacatatatgtactgccatacgagggtgaaaataagtgctagaagtttaatactttaatgacaagaagggtaata |
34675119 |
T |
|
| Q |
193 |
ttggaattttttataatttgtaggggtggaagta--------------atagggtaaaattttctttgtaacgattggtgaagattgtgatgtgtaaagg |
278 |
Q |
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||| |||||| |||||||||||||||| ||||| || ||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
34675120 |
ttgttatttttgataatttgtaggggtgaaagtatcaatgtaggggtaattgggtaaagttttctttgtaaggattggtgaagattgtgatgtgtaaagg |
34675219 |
T |
|
| Q |
279 |
tcttcttcaaagcatgacttctacatttactccagtccatagattatttgacgtataaaacaccctattgaaagaagataaaagaacattagtagaaatt |
378 |
Q |
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|| ||||| ||||| || |||| ||||||||||||||||| || |||||||||||||||||| || |||||||||||||||||||| ||||||||||| | |
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| T |
34675220 |
tcctcttcgaagcacgaattctgcatttactccagtccatggactatttgacgtataaaacagcccattgaaagaagataaaagaaaattagtagaaact |
34675319 |
T |
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| Q |
379 |
tttaacatttatttgataagtaacctttcacctttaagatgaataaatgacgaacatctc |
438 |
Q |
| |
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||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||| |
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|
| T |
34675320 |
tttaacatttattcgacaagtaaccttttacctttaagatgaataagtgacgaacctctc |
34675379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 224 - 429
Target Start/End: Original strand, 26974622 - 26974827
Alignment:
| Q |
224 |
gtaatagggtaaaattttctttgtaacgattggtgaagattgtgatgtgtaaaggtcttcttcaaagcatgacttctacatttactccagtccatagatt |
323 |
Q |
| |
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||||||||||||| |||||||||||| |||| |||||||||||||||||||| |||| ||||| ||||| || |||| |||||||||| |||||| || | |
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| T |
26974622 |
gtaatagggtaaagttttctttgtaaggatttgtgaagattgtgatgtgtaacggtcctcttcgaagcacgaattctgcatttactccggtccatggact |
26974721 |
T |
|
| Q |
324 |
atttgacgtataaaacaccctattgaaagaagataaaagaacattagtagaaatttttaacatttatttgataagtaacctttcacctttaagatgaata |
423 |
Q |
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| T |
26974722 |
atttgacgtataaaacaccccattgaaagaagataaaagaaaattagtagaaatttttaacatttatttgacaagtagcctttcacctttaagatgaata |
26974821 |
T |
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| Q |
424 |
aatgac |
429 |
Q |
| |
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| |||| |
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| T |
26974822 |
agtgac |
26974827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 26974557 - 26974604
Alignment:
| Q |
173 |
taatgacaagtagggtaatattggaattttttataatttgtaggggtg |
220 |
Q |
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| T |
26974557 |
taatgacaagaagggtaatattgttatttttgataatttgtaggggtg |
26974604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 46605355 - 46605297
Alignment:
| Q |
168 |
aagtttaatgacaagtagggtaatattggaattttttataatttgtaggggtggaagta |
226 |
Q |
| |
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||||| |||||||| ||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
46605355 |
aagttaaatgacaacaaggataatattggaatgatttaaaatttgtaggggtggaagta |
46605297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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