View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_high_3 (Length: 372)
Name: NF11155_high_3
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_high_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 35040598 - 35040245
Alignment:
| Q |
19 |
acccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcgaaactccaacggatccgaa |
118 |
Q |
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| T |
35040598 |
acccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtaaggaatctctctggtcgaaactcatgcggatccgaa |
35040499 |
T |
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| Q |
119 |
tataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacgatacaatcttcaatggactcat |
218 |
Q |
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| T |
35040498 |
tataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacggtacaatcttcaatggactcat |
35040399 |
T |
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| Q |
219 |
gaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgcaaaatctgattctattgccatatt |
318 |
Q |
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| T |
35040398 |
gaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgcaaaatctgattctattgccatatt |
35040299 |
T |
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| Q |
319 |
ttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcagg |
372 |
Q |
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| T |
35040298 |
ttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcagg |
35040245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 26 - 372
Target Start/End: Complemental strand, 35032574 - 35032228
Alignment:
| Q |
26 |
ccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcgaaactccaacggatccgaatataaca |
125 |
Q |
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| T |
35032574 |
ccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctggttgaaactccaacggatctgaatataata |
35032475 |
T |
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| Q |
126 |
ttggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacgatacaatcttcaatggactcatgaggcac |
225 |
Q |
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| T |
35032474 |
ttggatctcgttgaagttttgaaaggttggttaggagacacgtgccagctggcacgtggtatccaccaatggtacaatcctcaatagactcatgaggcaa |
35032375 |
T |
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| Q |
226 |
atcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgcaaaatctgattctattgccatattttccata |
325 |
Q |
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| T |
35032374 |
attgagtggtccaggtgggtacaaacgcaatgtttccttgataatggcttggagatactccaactttgccaaatctgattttattgccatattttccata |
35032275 |
T |
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| Q |
326 |
ccaatttgtgtatctaattcttgaatggctttgtttaaaacttcagg |
372 |
Q |
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| T |
35032274 |
ccaatttgtgtatctaattcttgaatggctttgtttagaacttcagg |
35032228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 362
Target Start/End: Complemental strand, 35026631 - 35026292
Alignment:
| Q |
23 |
gcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcgaaactccaacggatccgaatata |
122 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35026631 |
gcaccaaatggaatcaactcgaaatgttggcctttgacatcaacatccttgtgtgttgtgaggaatctttctggtcgaaactccaacggatccgaatata |
35026532 |
T |
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| Q |
123 |
acattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacgatacaatcttcaatggactcatgagg |
222 |
Q |
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| T |
35026531 |
acattggatctcgttgaagcttcgaaaggttggttaggagacgcgtaccagctggcacgtggtatccaccaatggtacaattctcaatagactcgtgagg |
35026432 |
T |
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| Q |
223 |
cacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgcaaaatctgattctattgccatattttcc |
322 |
Q |
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|| || |||||||| | |||||| |||||||||||||| ||||||||||||| ||||| || ||||| | ||||||| || ||||||||| |||||| |
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| T |
35026431 |
caaattcagtggtgctggtgggtatagacgcaatgtttctttgataatggcttgaagatactccaacttcgtcaaatctgtttgtattgccatcttttcc |
35026332 |
T |
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| Q |
323 |
ataccaatttgtgtatctaattcttgaatggctttgttta |
362 |
Q |
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| T |
35026331 |
ttaccaatttgtgtatctaattcatgaatgactttgttta |
35026292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 35048220 - 35047891
Alignment:
| Q |
19 |
acccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcgaaactccaacggatccgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||| | ||| |||| ||||||||||||||||||||||||||||| | |||| ||| |
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| T |
35048220 |
acccgcaccaaatggaatcaactcaaaatgttggcctttgagatcaatatccttgtgtgttgtgaggaatctctctggtcgaaactctagtggattagaa |
35048121 |
T |
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| Q |
119 |
tataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacgatacaatcttcaatggactcat |
218 |
Q |
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|||| | |||||| | |||||||| |||| ||| || | |||||| ||||| || ||||| || |||||||||| | ||||||||||| ||||||||| |
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| T |
35048120 |
tatataaacggatcttgctgaagttttgaaatgtttgtaaggagacgagtaccagcgggcacatgatatccaccaatggtacaatcttcagtggactcat |
35048021 |
T |
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| Q |
219 |
gaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactt-tgcaaaatctgattctattgccatat |
317 |
Q |
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||||||||| ||||| ||| ||| ||| |||| ||||||||||||||| |||| ||||| || ||||| ||| ||||||||||| ||| |||| | |
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| T |
35048020 |
gaggcacatttagtggcacggttggacacaagcgcattgtttccttgataatagcttgaagatactctaacttgtgc-aaatctgattccattaccatct |
35047922 |
T |
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| Q |
318 |
tttccataccaatttgtgtatctaattcttg |
348 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
35047921 |
tttctctaccaatttgtgtatctaattcttg |
35047891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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