View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_high_5 (Length: 286)
Name: NF11155_high_5
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 1107114 - 1106850
Alignment:
| Q |
10 |
gcagagaagcaaaagttgaatcccagcagtaagcaatagaaatgatttgataaatttcagtgctat---------gaatgaatgtttagattgcaaagaa |
100 |
Q |
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| T |
1107114 |
gcagagaagcaaaagttgaatcccagcagtaagcaatagaaatgatttgataaatttcagtgctattgctcgtatgaatgaatgtttagattgcaaagaa |
1107015 |
T |
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| Q |
101 |
atttaccaaaagagtaggaaaagagtagaggtagtatcttttcagttggaaaagagtattgtaggagggatagaaattagaatgatgcaaaataaggaaa |
200 |
Q |
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| T |
1107014 |
atttaccaaaagagtaggaaaagagtagaggtagtatcttttcagttggaaaagagtattggaggagggatagaaattagaatgatgcaaaataaggaaa |
1106915 |
T |
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| Q |
201 |
agcgttttgatacacattctgcatattctcatgatgttgaagatttcaatttaaagttgtgaaat |
265 |
Q |
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| T |
1106914 |
agcgttttgatacacattctgcatattctcatgatgttgaagatttcaatttaaagttgtgaaat |
1106850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 1108659 - 1108621
Alignment:
| Q |
78 |
atgaatgtttagattgcaaagaaatttaccaaaagagta |
116 |
Q |
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| T |
1108659 |
atgaatgcttagattgcaaagaaatgtaccaaaagagta |
1108621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 1108734 - 1108694
Alignment:
| Q |
28 |
aatcccagcagtaagcaatagaaatgatttgataaatttca |
68 |
Q |
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| T |
1108734 |
aatcctagcaataagcaatagaaatgatttgatatatttca |
1108694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 11250863 - 11250957
Alignment:
| Q |
28 |
aatcccagcagtaagcaatagaaatgatttgataaatttcagtgctatga-----atgaatgtttagattgcaaagaaatttaccaaaagagtag |
117 |
Q |
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| T |
11250863 |
aatcctagcaataagcaatagaaatgatttgatatatttcactgctattggttctatgaatgtttagattgcaaaggaatttaccaaaagagtag |
11250957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 11248968 - 11249060
Alignment:
| Q |
78 |
atgaatgtttagattgcaaagaaatttaccaaaagagtaggaaa--------agagtagaggtag-tatcttttcagttggaaaagagtattg |
161 |
Q |
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| T |
11248968 |
atgaatgcttagattgcaaagaaatgtaccaaaagagtagaaaaagacaggtagagtagaggtagctatcttttcagttggagaggagtattg |
11249060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 11250948 - 11250989
Alignment:
| Q |
119 |
aaaagagtagaggtagtatcttttcagttggaaaagagtatt |
160 |
Q |
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| T |
11250948 |
aaaagagtagaggtagtatcttttcggttggaaaggagtatt |
11250989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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