View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11155_high_9 (Length: 240)

Name: NF11155_high_9
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11155_high_9
NF11155_high_9
[»] chr8 (5 HSPs)
chr8 (98-212)||(30045120-30045235)
chr8 (99-212)||(30049524-30049638)
chr8 (99-212)||(7162477-7162591)
chr8 (192-223)||(30045233-30045264)
chr8 (192-223)||(30049636-30049667)
[»] chr4 (4 HSPs)
chr4 (99-212)||(3941379-3941493)
chr4 (99-212)||(3945778-3945892)
chr4 (192-223)||(3941491-3941522)
chr4 (192-223)||(3945890-3945921)
[»] chr3 (3 HSPs)
chr3 (99-196)||(22361019-22361116)
chr3 (99-196)||(22365406-22365503)
chr3 (118-183)||(23397337-23397404)
[»] chr7 (5 HSPs)
chr7 (1-100)||(39569333-39569432)
chr7 (99-212)||(39949538-39949652)
chr7 (99-212)||(39953930-39954044)
chr7 (1-85)||(39333125-39333210)
chr7 (11-64)||(39344417-39344470)
[»] chr2 (1 HSPs)
chr2 (99-212)||(1330569-1330683)
[»] chr5 (2 HSPs)
chr5 (99-212)||(196388-196491)
chr5 (99-212)||(200767-200870)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 30045120 - 30045235
Alignment:
Q  98 ctgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaag 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30045120 ctgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaa 30045219  T
Q  198 attat-ctgcacaagt 212  Q
    | ||| ||||||||||    
T  30045220 actatgctgcacaagt 30045235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 30049524 - 30049638
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30049524 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa 30049623  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  30049624 ctatgctgcacaagt 30049638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 7162477 - 7162591
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |    
T  7162477 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaatcattttaacttattttgttagtaaaa 7162576  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  7162577 ctatgctgcacaagt 7162591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 30045233 - 30045264
Alignment:
Q  192 agtaagattatctgcacaagttaagtaggttt 223  Q
    ||||||||||||||||||||||||||||||||    
T  30045233 agtaagattatctgcacaagttaagtaggttt 30045264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 30049636 - 30049667
Alignment:
Q  192 agtaagattatctgcacaagttaagtaggttt 223  Q
    ||||||||||||||||||||||||||||||||    
T  30049636 agtaagattatctgcacaagttaagtaggttt 30049667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 3941379 - 3941493
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3941379 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa 3941478  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  3941479 ctatgctgcacaagt 3941493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 3945778 - 3945892
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3945778 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa 3945877  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  3945878 ctatgctgcacaagt 3945892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 3941491 - 3941522
Alignment:
Q  192 agtaagattatctgcacaagttaagtaggttt 223  Q
    ||||||||||||||||||||||||||||||||    
T  3941491 agtaagattatctgcacaagttaagtaggttt 3941522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 3945890 - 3945921
Alignment:
Q  192 agtaagattatctgcacaagttaagtaggttt 223  Q
    ||||||||||||||||||||||||||||||||    
T  3945890 agtaagattatctgcacaagttaagtaggttt 3945921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 22361019 - 22361116
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22361019 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 22361116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 22365406 - 22365503
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22365406 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 22365503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 23397404 - 23397337
Alignment:
Q  118 aaaacttttctgaatactttattgtttatgttactttattgctta--tgtgtgtaattattttaactt 183  Q
    |||||||||||||||| ||  ||||| ||||||||||||||| ||  |||||||||| ||||||||||    
T  23397404 aaaacttttctgaatatttcgttgttaatgttactttattgcctatgtgtgtgtaatgattttaactt 23397337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39569333 - 39569432
Alignment:
Q  1 tgacattatccaatgaacaaaaaaggaatggtaagcaaagaaatcagtgtatttcaaaagcacttcttttaaaaccacaaggacagttttttaaaatctg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39569333 tgacattatccaatgaacaaaaaaggaacggtaagcaaagaaatcagtgtatttcaaaagcacttcttttaaaaccacaaggacagttttttaaaatctg 39569432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 39949652 - 39949538
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39949652 tgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa 39949553  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  39949552 ctatgctgcacaagt 39949538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 39954044 - 39953930
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39954044 tgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa 39953945  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  39953944 ctatgctgcacaagt 39953930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 39333210 - 39333125
Alignment:
Q  1 tgacattatccaatgaacaaaaaag-gaatggtaagcaaagaaatcagtgtatttcaaaagcacttcttttaaaaccacaaggaca 85  Q
    |||||| |||||||||||||||||  | | |  |||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  39333210 tgacatcatccaatgaacaaaaaaaaggaggagaagcaaagaaatcagtgtatttcaaaagcatttcttttaaaatcacaaggaca 39333125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 39344470 - 39344417
Alignment:
Q  11 caatgaacaaaaaaggaatggtaagcaaagaaatcagtgtatttcaaaagcact 64  Q
    |||||||||| ||| ||||| ||||||||||||| ||||||||| |||||||||    
T  39344470 caatgaacaagaaaagaatgataagcaaagaaattagtgtattttaaaagcact 39344417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 1330569 - 1330683
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |    
T  1330569 tgttgactaattgacctataaaacttgtctgaatactttattgtttatgttactctattgcttatgtgtgtaatcattttaacttgttttgttagtaaaa 1330668  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  1330669 ctatactgcacaagt 1330683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 196491 - 196388
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    ||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |    
T  196491 tgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaaaa 196403  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  196402 ctatgctgcacaagt 196388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 200870 - 200767
Alignment:
Q  99 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga 198  Q
    ||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |    
T  200870 tgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaaaa 200782  T
Q  199 ttat-ctgcacaagt 212  Q
     ||| ||||||||||    
T  200781 ctatgctgcacaagt 200767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University