View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_low_1 (Length: 497)
Name: NF11155_low_1
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 128 - 483
Target Start/End: Original strand, 23407523 - 23407880
Alignment:
| Q |
128 |
tgaattgctagatctatgtatcatagggagggtggtggtgaacaaactggttcacctatgtacgattgaagaaagactagggagcatgtggcaatcttgg |
227 |
Q |
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| T |
23407523 |
tgaattgctagatctatgtctcatagggagggtggtggtgaacaaactggttcacctatgtacgattgaagaaagactagggagcatgtggcaatcttgg |
23407622 |
T |
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| Q |
228 |
agaaaaattactttaatgtctatggaggataataagtatatggttcaatttttataa-gtgatcgggagagaatttttcaaggaagtccttgactaattg |
326 |
Q |
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| T |
23407623 |
agaaaaattactttaatgtctatggaggataataagtatatggttcaattgttataaggtgatctggagagaatttttcatggaagtacttgactaattg |
23407722 |
T |
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| Q |
327 |
at-aaaataagattatcttgcagaacgttgctataggtgaagatcctatggttatccaaatgaacacagcggagatttgggttcaagttcatcaacttcc |
425 |
Q |
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| T |
23407723 |
ataaaaatatgatcatcttgcagaaggttgctataggtgaagatcctatggctatccaaatgaacacaacggagatttgggttcaagttcatcaatttcc |
23407822 |
T |
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| Q |
426 |
cttcggcatcatcgatacaactatgggagcgttagttggaagtcatattggtggaatg |
483 |
Q |
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| T |
23407823 |
cttcggcatcatcgatacaactataggagcgttagttggaagtcatattggtggaatg |
23407880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 23407356 - 23407465
Alignment:
| Q |
18 |
atatatggatggagatgtaagttggtctctcaccattttatgaatgtaggtc-aattatttccatcatactcgttatcacaacactttttcttcttaaaa |
116 |
Q |
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| T |
23407356 |
atatatggatggagatgtaagttggtctctcaccatttcatgaatatcagtccaattctttccatcatactcattatcacaacgcgttttcttcttaaaa |
23407455 |
T |
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| Q |
117 |
ccatggaaaa |
126 |
Q |
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| T |
23407456 |
ccatggaaaa |
23407465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 483
Target Start/End: Complemental strand, 23408854 - 23408732
Alignment:
| Q |
361 |
ggtgaagatcctatggttatccaaatgaacacagcggagatttgggttcaagttcatcaacttcccttcggcatcatcgatacaactatgggagcgttag |
460 |
Q |
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|||||||| | ||||| ||||| |||||||||| || ||||||||||||| ||| |||||||| ||||| |||| ||||||||||| ||||| |||| |
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| T |
23408854 |
ggtgaagaccatatggctatcccaatgaacacaatagatatttgggttcaagatcaccaacttccattcggtttcatggatacaactataggagctttag |
23408755 |
T |
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| Q |
461 |
ttggaagtcatattggtggaatg |
483 |
Q |
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| T |
23408754 |
ttggaagtcatatttgttgaatg |
23408732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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