View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_low_2 (Length: 454)
Name: NF11155_low_2
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 21827151 - 21826721
Alignment:
| Q |
16 |
atgaacactttccatgcaaagatgtttcagtagcaataccttggccatttatgatcaaaggtgatccaccagaagttccggttcagcaatccaaaaagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21827151 |
atgaacactttccatgcaaagatgtttcagtagcaataccttggccatttatgatcaaaggtgatccaccagaagttccggttcctcaatccaaaaagaa |
21827052 |
T |
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| Q |
116 |
ctcgaaacgaatgcttccacctcttccaaagaaaggcaataataataatcatgcaacagaaggtgcatcaagttctccagagcacgaccctgcatcgctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21827051 |
ctcgaaacgaatgcttccacctcttccaaagaaaggcaataataataatcatgcaacagaaggtgcatcaagttctccagagcacgaccctgcatcgctt |
21826952 |
T |
|
| Q |
216 |
tcgcgaagcgaatcaggaatcggtgattcgtttgagaatagtaagagaatgttaccacctcttccaaagaaaaccaacaaccaagtaacagaaagtgaag |
315 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21826951 |
tcgcgaagcgaatcaggaataggcgattcgtttgagaatagtaagagaatgttaccacctcttccaaagaaaaccaacaaccaagtaacagaaagtgaag |
21826852 |
T |
|
| Q |
316 |
tagaagaagatcatggagctatttctaggacgaattcagggtttggcgattcgttttcttcggattctgcatcgattagatacggcgatgctctttcgat |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21826851 |
tagaagaagatcatggagctatttcgaggacgaattcagggtttggcgattcgttttcttcggattctgcatcgattagatacggcgatgctctttcgat |
21826752 |
T |
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| Q |
416 |
gtctaacgcagctactccatcaggttcatct |
446 |
Q |
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| T |
21826751 |
gtctaacgcagctactccatcaggttcatct |
21826721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 18945420 - 18945557
Alignment:
| Q |
61 |
catttatgatcaaaggtgatccaccagaagttccggttcagcaatccaaaaagaactcgaaacgaatgcttccacctcttccaaagaaaggcaataat-- |
158 |
Q |
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|||||||||||||||||||||||||| | | || ||||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
18945420 |
catttatgatcaaaggtgatccaccaagaatcccagttcatcaatacaaaaagaactcaaaacgaatgcttccacctcttccaaaaaaaggcaataataa |
18945519 |
T |
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| Q |
159 |
------aataatcatgcaacagaaggtgcatcaagttc |
190 |
Q |
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| T |
18945520 |
taataaaataatcatgcaacagaaggtgcatcaagttc |
18945557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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