View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_low_5 (Length: 341)
Name: NF11155_low_5
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 2298229 - 2297917
Alignment:
| Q |
18 |
ctcgctaacaaacaaaaccaaataataatttttgacnnnnnnnnnnccaaagaaaaagttaaagagtggtactatgactatcgtcttaaattgaaacctc |
117 |
Q |
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| T |
2298229 |
ctcgctaacaaacaaaaccaaataataatttttgacaaaaaaaa--ccaaagaaaaagttaaagagtggtactatgactatcgtcttaaattgaaacctc |
2298132 |
T |
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| Q |
118 |
cccaactttttgttttattttgattttccaagatgccaaaaaatctataaaaatctactannnnnnnnnnnagggatnnnnnnn-tctgtaaaaatctac |
216 |
Q |
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| T |
2298131 |
cccaactttttgtttgattttgattttccaagatgccaaaaaatctataaaaatctactatttttttttttaggaataaaaaaaatctataaaaatctac |
2298032 |
T |
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| Q |
217 |
tacttactacttcgcacatttattataagagataagattgaatgtagtttatacaaatcttggcaattttgtagaattaaattaggggtcccttaatatg |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2298031 |
tacttactacttctcacatttattataagagataagattgaatgtagtttatacaaatcttggcaattttgtagaattaaattaggggtcccttaatatg |
2297932 |
T |
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| Q |
317 |
gacctgatgtccatc |
331 |
Q |
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| T |
2297931 |
gaccttatgtccatc |
2297917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 2320378 - 2320283
Alignment:
| Q |
82 |
agtggtactatgactatcgtcttaaattgaaacctccccaactttttgttttattttgattttccaagatgccaaaaaatctataaaaatctacta |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
2320378 |
agtggtactatgactatcgtcttaaattgaaacctccccctacttttgttttattttgattttccaagatgctaaaaaatctataaaaaactacta |
2320283 |
T |
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