View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_low_6 (Length: 317)
Name: NF11155_low_6
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 41171561 - 41171835
Alignment:
| Q |
18 |
actttgactattcagcaaggtgcaattgtatctaattttaggttatgcagatatttcgaaagtgtggttataatgtggattaccatgcactatcttgagt |
117 |
Q |
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| T |
41171561 |
actttgactattcagcaaggtgcaattgtatctaattttaggttatgcagatatttcgaaagtgtggttataatgtggatcaccatgcactatcttgagt |
41171660 |
T |
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| Q |
118 |
tttcattgcaacattcattttcttgattggatatgtaggacaacaaatttcctctcaaatcaatactgaatatttaatttacaaatgataacaataatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171661 |
tttcattgcaacattcattttcttgattggatatgtaggacaacaaatttcctctcaaatcaatactgaatatttaatttacaaatgataacaataatca |
41171760 |
T |
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| Q |
218 |
tattacttattaggtatagactaattttacttatgcgtattgcatccataccgcttatacataccagcttcataaaccaagttcat |
303 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171761 |
tattacttattaggtatagactaattttactt-----------atccataccgcttatacataccagcttcataaaccaagttcat |
41171835 |
T |
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