View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_low_8 (Length: 275)
Name: NF11155_low_8
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 9665484 - 9665234
Alignment:
| Q |
11 |
agcagcagagatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcc |
110 |
Q |
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| T |
9665484 |
agcagcaaagatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccatcccaatgatctgcttcgtctgtggatcc |
9665385 |
T |
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| Q |
111 |
tgtacctgaacaccagatgttgaaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatg |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9665384 |
tgtacctgaacaccagatgttgaaaaataaacattcagtccttgttcacacaattgaccaacaaaaataagattaagtgtcaagttaggaatgtaatatg |
9665285 |
T |
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| Q |
211 |
tgttaggtagggtgagatttgaggtggatacatgaccggtataagtgatgt |
261 |
Q |
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| T |
9665284 |
tgtcaggcagggtgagatttgaggtggatacatgaccggtatgagtgatgt |
9665234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 11351058 - 11350953
Alignment:
| Q |
11 |
agcagcagagatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
11351058 |
agcagcagagatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccgtcccaatgatctgcttcgtctgtggatcc |
11350959 |
T |
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| Q |
111 |
tgtacc |
116 |
Q |
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| T |
11350958 |
tatacc |
11350953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 259
Target Start/End: Complemental strand, 12617584 - 12617358
Alignment:
| Q |
33 |
ggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacctgaacaccagatgttg |
132 |
Q |
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| T |
12617584 |
ggaagatgaagagattgaagctcaaataatagacccaccctgcgacatgtcccaatgatatgtttcgtttgtagattaagtacatggacacctgaaggag |
12617485 |
T |
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| Q |
133 |
aaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgttaggtagggtgagatttga |
232 |
Q |
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|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||| ||| ||| || ||||| ||||| |
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| T |
12617484 |
aaaaataaacattttgtccttgttcacacaattggccaacagaaataagattaagtgtcaagttctgtatgcaatagatgtaaggaagagtgaggtttga |
12617385 |
T |
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| Q |
233 |
ggtggatacatgaccggtataagtgat |
259 |
Q |
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|||||||||||||| |||| |||||| |
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| T |
12617384 |
ggtggatacatgactagtatgagtgat |
12617358 |
T |
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