View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11155_low_9 (Length: 253)
Name: NF11155_low_9
Description: NF11155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11155_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 41172190 - 41171952
Alignment:
| Q |
15 |
cagatacctagttttcttgatttaggctatattaggttctttaaattcatactgtcgctagatttcaagtgtaatcagattaatttctatttgagttctg |
114 |
Q |
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| T |
41172190 |
cagatacctagttttcttgatttaggctatattaggttctttaaattcatactgtcgctagatttcaagtgtaatcagattaatttctatttgagttctg |
41172091 |
T |
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| Q |
115 |
tatctgagatgattttaatttctgtttcagctaattatatttaattttgttgtttcttttcattaacgtctagggagtgacctatatatacttgaagcat |
214 |
Q |
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| T |
41172090 |
tatctgagatgattttaatttctgtttcagctaattatatttaattttgttgtttcttttcattaacgtctagggagtgacctatatatacttgaagcat |
41171991 |
T |
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| Q |
215 |
ataatctggtgaggcctacataccataccctttgatgaa |
253 |
Q |
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| T |
41171990 |
ataatctggtgaggcctacataccataccctttgatgaa |
41171952 |
T |
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