View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11156_high_3 (Length: 494)
Name: NF11156_high_3
Description: NF11156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11156_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 3659250 - 3659715
Alignment:
| Q |
1 |
acaactcaatgtctcttgtggtttcattttgttgtgtcacgcgaggagcccgagggatcacccacattagacaagagcagccacacaaatgagatagaca |
100 |
Q |
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|||||||||||||||||||||||||| | |||||||||| | ||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
3659250 |
acaactcaatgtctcttgtggtttcactatgttgtgtcatgagaggatcccgagggaccacccgcattagacaagagcaaccacacaaatgagatagaca |
3659349 |
T |
|
| Q |
101 |
cca----caattatctaaatgccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattacca |
196 |
Q |
| |
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||| || |||||||||| |||||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| |
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| T |
3659350 |
ccaaccacacttatctaaattccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattacca |
3659448 |
T |
|
| Q |
197 |
aacaatctaagtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcac |
296 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3659449 |
aacaatctaagtccaatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcac |
3659548 |
T |
|
| Q |
297 |
gtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaact |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659549 |
gtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc-------- |
3659640 |
T |
|
| Q |
397 |
gctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaac |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3659641 |
-------cactatatctccgtcatcgctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaac |
3659715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 119 - 463
Target Start/End: Original strand, 3653106 - 3653449
Alignment:
| Q |
119 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
|
| Q |
218 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
|
| Q |
318 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3653304 |
ctcttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgt |
3653403 |
T |
|
| Q |
418 |
catcgctactacgtgttgatcctccactgtcctccaccagcacttc |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3653404 |
catcgctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 206 - 463
Target Start/End: Original strand, 3657199 - 3657452
Alignment:
| Q |
206 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtag---acaaagccttacatgaatataatgtaacgacatttcacgtcaaa |
302 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||| |||| |||| | | |||||||| || |||| |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatga---taattttatgacatttcgcgacaaa |
3657295 |
T |
|
| Q |
303 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
402 |
Q |
| |
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| ||||| || ||||||||||| || |||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | ||||||||||||| |
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|
| T |
3657296 |
ttgttcacaccattactcttcaagtct----tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctt |
3657391 |
T |
|
| Q |
403 |
tcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
463 |
Q |
| |
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||| | |||||| | | | || ||||| ||||||||| ||| |||||||||||||||||| |
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|
| T |
3657392 |
tcagtcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 444
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
| Q |
303 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
402 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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|
| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
|
| Q |
403 |
tcactatatctccgtcatcgctactacgtgttgatcctccac |
444 |
Q |
| |
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||||| |||||| | | | |||||||| ||||||||||||| |
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|
| T |
3649281 |
tcactcaatctccataaccactactacgcgttgatcctccac |
3649322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
303 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
361 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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