View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11156_low_2 (Length: 559)
Name: NF11156_low_2
Description: NF11156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11156_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 205 - 427
Target Start/End: Original strand, 15582457 - 15582677
Alignment:
| Q |
205 |
catttggggaatgaaaaataccaaccaatatgactcagttgatgaatagaacacagccataaggagcaaaaacagttgtgacaatgtgcgttctgtttct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15582457 |
catttggggaatgaaaaataccaaccaatgtgactcagttgatgaa-----cacagccgtaaggagcaaaaacagctgtgacaatgtgcgttctgtttct |
15582551 |
T |
|
| Q |
305 |
tctggtttatgtctttt---tatatatgtatggggaaggattatttgttgcattaatatgtttattggtaccaaaaataagtttattgtgtgcaaaaata |
401 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15582552 |
tctggtttatgtcttttttttatatatgtatggggaaggattatttgttgcattaatatgtttattggtaccaaaaataagtttattgtgtgcaaaaata |
15582651 |
T |
|
| Q |
402 |
agtttattgagtgcaaaaatatcatt |
427 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
15582652 |
agtttgttgagtgcaaaaatatcatt |
15582677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 15582262 - 15582388
Alignment:
| Q |
9 |
aatgagaatgcaatcaggtaagtcactaagcttaacatcatcattatcattaccatgtcttctcctcttagatattattatttgttgagtcatattatct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15582262 |
aatgagaatgcaatcaggtaagtcactaagtttaacatcatcattatcattaccatgtcttctcctcttagatattattatttgttgaatcatattatct |
15582361 |
T |
|
| Q |
109 |
aaaatataatttattcagataaacacc |
135 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15582362 |
aaaatataatttattcagataaacacc |
15582388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 15582675 - 15582716
Alignment:
| Q |
468 |
attgattcgtattttagctgcaataatatgtttattggccca |
509 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15582675 |
attgattcgtatttttgctgcaataatatgtttattggccca |
15582716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 51119671 - 51119613
Alignment:
| Q |
341 |
attatttgttgcattaatatgtttattggtaccaaaaataagtttattgtgtgcaaaaa |
399 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51119671 |
attatttgttgcaataatatgtttattggtaccaaaaataagtttattgattgcaaaaa |
51119613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 451
Target Start/End: Complemental strand, 51119737 - 51119642
Alignment:
| Q |
356 |
aatatgtttattggtaccaaaaataagtttattgtgtgcaaaaataagtttattgagtgcaaaaatatcatttgctgcgataatatgtttattggt |
451 |
Q |
| |
|
||||||||||||| | | | |||||| |||||| ||||||| || ||| || |||||||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
51119737 |
aatatgtttattgtttgccacaataagattattgcctgcaaaactatgttgatcgagtgcaaaaatattatttgttgcaataatatgtttattggt |
51119642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 51119992 - 51119924
Alignment:
| Q |
341 |
attatttgttgcattaatatgtttattggtaccaaaaataagtttattgtgtgcaaaaataagtttattg |
410 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||| | |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
51119992 |
attatttgctgcaataatatgttaat-ggtactagaaataagtttattgcttgcaaaaataaatttattg |
51119924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University